Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1638 ATGGGTTGCTGTTTTAGTGCCAGAGTCAAAGCTGAAAGCCCTTCACGTAATGTTTTAAATTCAAGTGATGGTAGCAAAGAAGAGGATGGTTTAAGTGGTTTAAGCAGCAAGGTCTCTATTACTCCCTCTCTGCCTCCTCCAACTCCTCGGACAGAGGGTGAGATCTTGCAGTCCTCTAATTTAAAGAGTTTCAGCTACAATGAGCTAAGAATAGCGACAAGGAACTTTCGTCCCGATAGTGTGGTAGGCGAAGGTGGGTTTGGTAGTGTCTTTAAGGGGTGGATTGATGAGCAAACCCTTGAGCCAGCTAAACCAAGGAGTGGGATTGTCATTGCTGTAAAGAAGCTTAACCAGGAAGGCTTCCAGGGACACAATGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTACATCATCCTAATCTTGTGAAATTGATTGGCTACTGCTTAGAGAATGACCACCGGCTTTTGGTGTATGAATTTTTGACCAAAGGCAGCTTGGATAACCATTTATTCAGGAGGGCATCTCATGTTGAACCACTTTCTTGGAGCATCCGAATGAAAGTTGCCCTAGATGCTGCTAAGGGTCTTGCATATCTTCACAGTGACGAAGTAAAAGTGATATATCGAGACTTTAAAACTTCTAATATCTTGCTTGATTCGAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAGGATGGGCCAGCAGGTGATAAGAGCTATGTCTCTACAAGGGTAATGGGCACCTATGGCTACGCTGCTCCTGAGTATATGGCCACAGGTCACTTAACCAAGAAGAGTGATATATACAGTTTTGGGGTTGTTCTGCTTGAAATTCTCTCCGGCAAACGTGCAGTGGACAAAAACAGGCCAACCAGGGAACACAATTTGGTTGAATGGGCCAAGCCTTACCTTTCAAGCAAACGTCGAATTTTCCAAGTTATGGATGCTCGCATCGAAGGCAAATATCGAGTACGCGAAGCAATGAAGGTTGCTAACATTGCAATTCAGTGCTTGTCGGTAGAACCGAGGTTCAGACCGAGCATGGCTGATGTGGTCAGAGCATTGGAACAACTTCAGGGTTCCGATGACACTGGTGGCTCAAGCAGTAGCAGTAGTAGTGGTCCTAAACCGCAGAAAACAACATCAACATCATCAGCTTCTCCACTTCTTGCATAA 1185 0.4481 MGCCFSARVKAESPSRNVLNSSDGSKEEDGLSGLSSKVSITPSLPPPTPRTEGEILQSSNLKSFSYNELRIATRNFRPDSVVGEGGFGSVFKGWIDEQTLEPAKPRSGIVIAVKKLNQEGFQGHNEWLTEINYLGQLHHPNLVKLIGYCLENDHRLLVYEFLTKGSLDNHLFRRASHVEPLSWSIRMKVALDAAKGLAYLHSDEVKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDKSYVSTRVMGTYGYAAPEYMATGHLTKKSDIYSFGVVLLEILSGKRAVDKNRPTREHNLVEWAKPYLSSKRRIFQVMDARIEGKYRVREAMKVANIAIQCLSVEPRFRPSMADVVRALEQLQGSDDTGGSSSSSSSGPKPQKTTSTSSASPLLA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1638 394 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1638 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Sto5g1638 394 PANTHER OS01G0588500 PROTEIN-RELATED 29 375 - -
Sto5g1638 394 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Sto5g1638 394 MobiDBLite consensus disorder prediction 363 394 - -
Sto5g1638 394 ProSitePatterns Protein kinases ATP-binding region signature. 82 115 IPR017441 GO:0005524
Sto5g1638 394 MobiDBLite consensus disorder prediction 358 394 - -
Sto5g1638 394 MobiDBLite consensus disorder prediction 15 41 - -
Sto5g1638 394 MobiDBLite consensus disorder prediction 15 54 - -
Sto5g1638 394 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Sto5g1638 394 SUPERFAMILY Protein kinase-like (PK-like) 49 358 IPR011009 -
Sto5g1638 394 PANTHER KINASE 1B 29 375 - -
Sto5g1638 394 CDD STKc_IRAK 82 361 - -
Sto5g1638 394 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1638 Sto-Chr5 11542942 11545866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1638 54 389 Glycoside Hydrolase AT3G07070 46.588 4.59e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sto5g1638 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1638 - - gmx:100800735 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1638 5 11542942 11545866 Sto5g1638 5 11542942 11545866 CCT
Sto5g1638 5 11542942 11545866 Sto5g1638 5 11542942 11545866 ECH