Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1622 ATGAGTTTTGTTCTTCGAGGAACAAGAGCAGATATAGAAAGTGGATTTCCTGGATTTATGCCCGAGAGGCGTGCATTGcgtGTTCATGCAGCACGTCCatctaattctaattctctcACTTTTCTTGTCACAGtTCTCCTGCTATTCATGATATTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGATAGTGCTTGGTGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAGATGAGGCCCAAGCCAATGCTTCAGCAGCCAGTGGCCTTCTTGGCCATACTGAAGTGCGGTTGCATATGCCACCATCAATAGCACTTACCACCCGAGGACGTCTACAAGGCCTCAGGCTTCAGCTTGCACTTCTTGATCAGGAGTTTGATGACCTAGattatGAAACTTTAAGAGCTCTGGATTCAGATAATGTTCCTCCTGCACCTTCTATGACTGAGGAAGAGATTAATGAGCTTCCTGTTCACAAATACAAGGTTTCTGGTCTCCAGAGCAGGAAATCCTCAATGCAACAGACCTCGTCTTCCATGTTTGCTGAGGTATCAGCTAAGTCGAAGAAGCAAGATGCCTCGAATGCAGCTGTTGGCATGAAAGCCTTCGATGATGAGCTGACTTGCAGTGTATGTTTGGAGCAAGTTAATGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCACACTAATTGCATTGATCCCTGGCTGCGGCAACAAGGAACATGCCCTGTCTGTAAATTCAGAGCAGGATCTGCATGGCATGAAAGTGAACAGAATCAAGTCGATGCTTCAGACATGGTTTGA 843 0.446 MSFVLRGTRADIESGFPGFMPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWIVLGVFLMATMLRMYATCQQLQDEAQANASAASGLLGHTEVRLHMPPSIALTTRGRLQGLRLQLALLDQEFDDLDYETLRALDSDNVPPAPSMTEEEINELPVHKYKVSGLQSRKSSMQQTSSSMFAEVSAKSKKQDASNAAVGMKAFDDELTCSVCLEQVNVGDLLRSLPCLHQFHTNCIDPWLRQQGTCPVCKFRAGSAWHESEQNQVDASDMV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1622 280 SUPERFAMILY RING/U-box 213 262 - -
Sto5g1622 280 Pfam Ring finger domain 217 259 IPR001841 -
Sto5g1622 280 SMART ring_2 218 258 IPR001841 -
Sto5g1622 280 CDD RING-H2_PA-TM-RING 217 259 - -
Sto5g1622 280 PANTHER TARGET OF ERK KINASE MPK-1 1 280 - -
Sto5g1622 280 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Sto5g1622 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 263 IPR013083 -
Sto5g1622 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1622 Sto-Chr5 11382592 11385346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1622 1 280 C3H Transcription Factor Family AT3G55530 72.598 9.77e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1622 K16283 - gmx:100777936 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1622 5 11382592 11385346 Sto5g1622 5 11382592 11385346 ECH