Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1615 ATGCACAGGCTTAGGACAAGGACAGGATTTGGCTCTTCATGTGGGGCATGCAAGTTTCTTAGGAGAAAGTGTACAGTTGATTGTGTGTTTTCTCCTTACTTCTCCTATGATCATGCTTCAACCCATTTTGCAGCAGTGCACAAGGTTTTCGGTGCTAGTAATGTCTCCAGGTTACTGCAAAACTTACCAGTTCAGAACAGAAGTGATGCAGCCATCACTGTCTCTTATGAAGCTCTGGCTAGAATGCAGGATCCTGTATATGGTTGTGTTTCTCACATCTTTGCACTGCAGCAACAGGTTGCAGGCTTGCAAGAGGAAATAGATAATCTGGGAAATCTTATGGCCAATTCTACTGCTGGTGTTGCCAGTTGCAGTAGCAGTTATCAACCTCCAACGAGCAGAAACTCGAACGGGAGAGAATTTTCTTGGGAGCAAGATCAAAAAAGTATAGAGTTTTATCAGAATCAATTGGCCAATCTGGTTTCTCAACAAGGAAGTGTTTCAGACTACCAAGGAATGGAAAGCCATGTGAATACGGAGTTCCCCAATGCATTTCAATTGGAAGACCAATTATTTGAAGACTCTGACCCTAATCCATTTGAGAAGCTCCTATTGGGAATTGACCAAGAGGTTTTCATGAATCATCCATGGCCCTATGTTCAACCATAA 669 0.4275 MHRLRTRTGFGSSCGACKFLRRKCTVDCVFSPYFSYDHASTHFAAVHKVFGASNVSRLLQNLPVQNRSDAAITVSYEALARMQDPVYGCVSHIFALQQQVAGLQEEIDNLGNLMANSTAGVASCSSSYQPPTSRNSNGREFSWEQDQKSIEFYQNQLANLVSQQGSVSDYQGMESHVNTEFPNAFQLEDQLFEDSDPNPFEKLLLGIDQEVFMNHPWPYVQP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1615 222 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Sto5g1615 222 Coils Coil 93 113 - -
Sto5g1615 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 218 - -
Sto5g1615 222 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Sto5g1615 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 8 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1615 Sto-Chr5 11304420 11305688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1615 11 116 AS2 family AT5G06080 75.472 2.46e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto5g1615 LOB 2.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1615 K13945 - gmx:100787638 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1615 5 11304420 11305688 Sto5g1615 5 11304420 11305688 ECH