Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1611 ATGGCGGCGAATCGGTGGTGGGCTGAGAACCTCGCAATGAGGCCCACGGAAATCCCCTTGTCGTCGTCTTCTTCTCCATCCCTCCAGCTCATGAGAAATCCAGAAGATCGTCGCGACCATGGCGGATTCAACCCCAACGCCGCAACGCCTACCAATAGCAGCAATAGCAACACCAACAACGCCGACGACGACGAGAGCCGCGGCGGTGAGGCGGCCGATGATCAGAAGCCCGGGAGCAGCGGCGGCGGCGGGAGGCGGCCGCGGGGCCGACCGCCGGGGTCGAAGAACAAGGAGAAGCCGCCGGTGGTTATAACCAAGGAGAGCCCCAACGCCCTGCGCAGCCACGTGTTGGAGATCGGCAGCGGCAGCGACGTTGCTGAGAGCATCGCCGCCTTCGCGAATCGGAGGCACCGAGGCGTGTCGGTGCTCAGCGGCAGCGGCATTGTGACCAATGTCACTCTCCGGCAGCCGTCGGCGCCGGGTGGGGTTATCACCCTGCAAGGGAGATTCGAGATTTTGTCTCTCTCCGGCGCGTTCTTGCCGGCTCCTTTGCCGCCCGGGGCCACCGGGCTGACCGTGTACTTGGCCGGCGGGCAGGGGCAGGTGGTTGGGGGAACTGTGGTGGGTTCGCTGGTGGCTTCAGGGCCTGTGTTGGTTATTGCGGCAACATTTGCTAATGCTACTTATGAAAGGTTACCATTAGAGGATGAAGTAGTTGGTGGGGAAAAAGAAGGTGAAGAGAAGCAATGTGAAGTGAATTCAGGAACTACTAATTCAGTATCTCAAGGTTTGGGTGAACAAGTTTCAATGCCAATCTCGTCCACCAGGATACTAATTAGAGGCTATTGGAAACCCTCCCATATTAATTCTCCGAGTCCTCGAGAGGATCAAGGCTTGGTTCACGGCGGCGGCCGGCAGCGAAAGGGACATTCGGCACGGTCCTCGTGA 948 0.5939 MAANRWWAENLAMRPTEIPLSSSSSPSLQLMRNPEDRRDHGGFNPNAATPTNSSNSNTNNADDDESRGGEAADDQKPGSSGGGGRRPRGRPPGSKNKEKPPVVITKESPNALRSHVLEIGSGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPSAPGGVITLQGRFEILSLSGAFLPAPLPPGATGLTVYLAGGQGQVVGGTVVGSLVASGPVLVIAATFANATYERLPLEDEVVGGEKEGEEKQCEVNSGTTNSVSQGLGEQVSMPISSTRILIRGYWKPSHINSPSPREDQGLVHGGGRQRKGHSARSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1611 315 MobiDBLite consensus disorder prediction 16 31 - -
Sto5g1611 315 ProSiteProfiles PPC domain profile profile. 109 245 IPR005175 -
Sto5g1611 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 236 - -
Sto5g1611 315 MobiDBLite consensus disorder prediction 1 105 - -
Sto5g1611 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 273 IPR014476 GO:0003680
Sto5g1611 315 CDD DUF296 113 196 IPR005175 -
Sto5g1611 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 113 225 IPR005175 -
Sto5g1611 315 MobiDBLite consensus disorder prediction 241 264 - -
Sto5g1611 315 Gene3D - 112 242 - -
Sto5g1611 315 MobiDBLite consensus disorder prediction 284 315 - -
Sto5g1611 315 MobiDBLite consensus disorder prediction 45 62 - -
Sto5g1611 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 44 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1611 Sto-Chr5 11286339 11287366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1611 85 241 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 75.159 7.28e-68 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1611 - - aprc:113874473 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1611 5 11286339 11287366 Sto5g1611 5 11286339 11287366 CCT
Sto5g1611 5 11286339 11287366 Sto5g1611 5 11286339 11287366 ECH