LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g1603	ATGGACGGCCCAGATTGCATCTTCCTATTCAATCCTTCGACGTCATACCAACTGTATGTGTCGGATCTTGCCCGTGACGGTGACGGGCAGCCTGCCCGTGATGAAGTGTGGCCCCCAGGTGTGGCTCAGAAATCTGTTAGTAGTAATTTGGTAATTTCTGAAATGGCTGGGATTTGCTGTGGTGTTGTTGGGGAAGGAGAGACGCCGACTCCGATGGAGCCGAGCCGACCTTCCCGTCGTCGTCGATTGGACCTACTGCCCTTGAAGTACATAGCTGACATGGCAGTGCCGCCACCGGAGACCGGCGCGAAGCGCCAAAAGCTGGATCTCTGTACTTCTTCTCCCACACAACCTAGAGATTGCGTAAACGCAGTTGAGAATTGTGAACCTAGCGGTGTTAAAAACGAGGAGGAAAACAATATAGAACCTAAAGGAGACGCAATACTTCAATCCACGATTTCTTTGTTAAATTCGACTGCTACAACAGCGCATGGTAATAATACTAATGAGGCTATTAACGAGTGTCCAAAGTATGGCGTTACATCTGTTTGTGGCAGAAGAAGAGACATGGAAGACGCTGTTTCAGTTCATCCATCGTTCTGCCAAGAAAAAGGGGAAAATCACAAAGAGTTTCACTACTTCGGTGTGTTCGACGGCCATGGCTGCTCTCATGTAGCGACGATCTGTAAGGACAGGTTACACGAGATTGTGAAGGAAAAAGTTGGTGGATCTCGTGAGGATTTGGAATGGAAGTCTACGATGGAACAGAGTTTCGCTCGCATGGACGAGGAGGTGCAGAACTGGAGCCAGACCAACCAGAGCTCCACTTGCAGATGCGAGCTTCAGACTCCTCACTGCGATGCCGTCGGATCTACGGCCGTCGTTACCGTCGTTACGCCGGATAAGATCATCGTCTCAAACTGCGGCGATTCGCGCGCCGTTCTTTGCCGAAACGGCGTCGCCATACCGCTCTCCTCCGATCACAAGCCTGATCGACCCGACGAGTTACTCCGAGTCCAAGCCGCGGGAGGGCGCGTGATATATTGGGATGGTCCAAGAGTTCTCGGAGTGCTTGCAATGTCCAGAGCCATAGGCGACAATTATCTGAAACCTTACGTCATATCAGAGCCGGAAGTGACGGTGACGGACCGGACGGacgacgatgagtgtttgatTCTGGCCAGCGATGGGCTGTGGGACGTGGTATCAAACGACACCGCGTGTGGGGTGGTGCGGATGTGTCTTAAGGTGCAGAATCCGCCGTCGCCGCCGGGATCTCCGGGGACGGATATGGCGGTGTGCTCCGCCGCGGACGGGTCAGACAAGGCGTGCTCCGACGCGTCCATCTTGCTGACGAAGTTGGCGTTGGCGAGGCATAGTACGGACAATGTGAGCGTCGTTGTGGTTGAtttgaggagagagaaagaaaaacaagaatCCAATTCCAACGACGACGATGATAGcaacaataatattattgaatga	1485	0.5091	MDGPDCIFLFNPSTSYQLYVSDLARDGDGQPARDEVWPPGVAQKSVSSNLVISEMAGICCGVVGEGETPTPMEPSRPSRRRRLDLLPLKYIADMAVPPPETGAKRQKLDLCTSSPTQPRDCVNAVENCEPSGVKNEEENNIEPKGDAILQSTISLLNSTATTAHGNNTNEAINECPKYGVTSVCGRRRDMEDAVSVHPSFCQEKGENHKEFHYFGVFDGHGCSHVATICKDRLHEIVKEKVGGSREDLEWKSTMEQSFARMDEEVQNWSQTNQSSTCRCELQTPHCDAVGSTAVVTVVTPDKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTDRTDDDECLILASDGLWDVVSNDTACGVVRMCLKVQNPPSPPGSPGTDMAVCSAADGSDKACSDASILLTKLALARHSTDNVSVVVVDLRREKEKQESNSNDDDDSNNNIIE	494

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto5g1603	494	MobiDBLite	consensus disorder prediction	475	494	-	-
Sto5g1603	494	ProSiteProfiles	PPM-type phosphatase domain profile.	177	471	IPR001932	-
Sto5g1603	494	CDD	PP2Cc	177	471	IPR001932	-
Sto5g1603	494	Gene3D	-	172	481	IPR036457	-
Sto5g1603	494	SMART	PP2C_4	165	469	IPR001932	-
Sto5g1603	494	PANTHER	ALPHABET, ISOFORM E-RELATED	78	476	-	-
Sto5g1603	494	PANTHER	PROTEIN PHOSPHATASE 2C-LIKE PROTEIN	78	476	-	-
Sto5g1603	494	SUPERFAMILY	PP2C-like	174	472	IPR036457	-
Sto5g1603	494	ProSitePatterns	PPM-type phosphatase domain signature.	213	221	IPR000222	GO:0043169
Sto5g1603	494	Pfam	Protein phosphatase 2C	177	462	IPR001932	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g1603	Sto-Chr5	11233687	11235799	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g1603	55	481	PP2C-type Phosphatase Gene Family	AT3G11410	59.142	1.09e-148	429

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g1603	K14497		-	gmx:100776356	555.058

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g1603	5	11233687	11235799	Sto5g1603	5	11233687	11235799	CCT
	Sto5g1603	5	11233687	11235799	Sto5g1603	5	11233687	11235799	ECH

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