Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1586 ATGGCTCCTTCTCATCAAGTCAATCATCTTTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCAGAGAGGAAGTCTGGCTTTATGAAATGGTTTAGTAAGCTTTTCAAAGGTGGGTCCAATCGAGGAAGAGGAGGTCGTCATCTTCAGCAGCCTACAGAGGAAAATATGGTTTGGCGTAATCCAGCTAGATCATTGGATGATCGTTCTAGAGCACAAAAGGAGAAAGAGGATCTGGAACATGCTATTGCACTTTCTTTAGCTGAAGATTTGAAGAGACCAAATGCTCGGCAAGGATATAGATGGAGGACAGACACTGATGAAGACTATGAGAGGGAACATCACGATAGCCTGAACTCATCTGCACATCCTCCATATAACCCTTCATTTCATCCCAGGGACCGTAGCAGAATCTGTGGTGGGTGCAAGCAGGAGATAGTCTACGGCAATTGTTTGGGATGCATGAATACTTTTTTCCATCCTGACTGCTTTCGCTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGAAGGCATCCATATCACAAGTCATGTTTCAAAGAGTTGACCCACCCAAAATGCGAAGTTTGTCACCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATCGGTGTCACCCGTTTTGGTCCCAAAAGTATTGTCCGTCTCATGAATATGATAATACAGCTCGTTGCTGTAGTTGCGAAAGACTGGAGTCTTGGAATGAAAAATACTATAGTTTGGGAGATGGACGGAGTTTGTGCTTAGAGTGCATGGAATCTgctattatggatactggtgaTTGTCAACCTCTTTATCATGCTATCAGAGATTATTACGAAGGAATGAATATGAGAATAGATCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCGCTGAATGAAGCTATTGTCGGGGAGAAGAATGGTTACCATCACTTGCCAGAGACAAGGGGGTTGTGCCTTTCAGAAGAACAAACCGTCACCAGTGTACATAGAAGACCAAGGATTGGAGGCCACCGACTAATTGGGATGAGAACTCAACCTCAAAAGCTAACTAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTATGGTCTTCCAAGCTTTAATAATTTTGCTGGATACAGGTTACTGACAGGTGCTATCCTTGCCCACGAGTTGATGCATGGCTGGTTACGCCTTAAAGGTTACCGCAACCTTATTCCTGAAGTAGAGGAAGGTATATGTCAAGTTCTATCTTATATGTGGCTTGAGTCAGAAGTGATGCCTGGCTTCAGAAACATGCCTTCAACTTCAGcatcCTCCTCTTTCTCCTCATCAAAGAAAGGTGCCAAGTCTCATGTTGAGAATAAACTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCTCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTGAACAAATACGGTTTACGTTGTACTCTCGAGCATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1530 0.4235 MAPSHQVNHLSHPCIYGDFASSYSERKSGFMKWFSKLFKGGSNRGRGGRHLQQPTEENMVWRNPARSLDDRSRAQKEKEDLEHAIALSLAEDLKRPNARQGYRWRTDTDEDYEREHHDSLNSSAHPPYNPSFHPRDRSRICGGCKQEIVYGNCLGCMNTFFHPDCFRCHSCRYPITEREFSLSGRHPYHKSCFKELTHPKCEVCHQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLESWNEKYYSLGDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMRIDQQIPMLLVERQALNEAIVGEKNGYHHLPETRGLCLSEEQTVTSVHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPSFNNFAGYRLLTGAILAHELMHGWLRLKGYRNLIPEVEEGICQVLSYMWLESEVMPGFRNMPSTSASSSFSSSKKGAKSHVENKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGSFPL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1586 509 Coils Coil 71 91 - -
Sto5g1586 509 ProSitePatterns LIM zinc-binding domain signature. 141 175 IPR001781 -
Sto5g1586 509 CDD LIM_DA1 141 193 - -
Sto5g1586 509 Gene3D Cysteine Rich Protein 135 200 - -
Sto5g1586 509 ProSiteProfiles LIM domain profile. 139 199 IPR001781 -
Sto5g1586 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 230 - -
Sto5g1586 509 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 509 - -
Sto5g1586 509 PANTHER PROTEIN DA1-RELATED 2 20 509 IPR045218 -
Sto5g1586 509 SMART lim_4 140 192 IPR001781 -
Sto5g1586 509 Pfam LIM domain 141 194 IPR001781 -
Sto5g1586 509 Pfam Protein DA1 290 504 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1586 Sto-Chr5 11097160 11101790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto5g1586 DA1-like 9.4e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1586 - - gmx:100784976 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1586 5 11097160 11101790 Sto5g1586 5 11097160 11101790 CCT
Sto5g1586 5 11097160 11101790 Sto5g1586 5 11097160 11101790 ECH