Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1554 ATGTCTTTCATCGGTACCCAACAGAAATGCAAAGCTTGCGAGAAAACTGTGTATCCTGTTGATCAGTTATCCGCTGATGGCGCCGCTTACCATAAGGCCTGTTTCAGGTGCTCTCACTGCAAGGGAACATTGAAGCTAAGCAGCTATTCCTCAATGGAAGGTGTTCTCTACTGTAAACCTCATTATGAGCAGCTCTTCAAGGAGACTGGCAGTTTCAACAAGAACTTCCAGTCACCTGCAAAGCTAGCTGACAAGACTACTCCTGAGCtgACAAGGTCACCAAGTAAAGCTGCAAGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAGGGCCAAGCCTATCACAAATCATGCTTCAAGTGTTCACATGGTGGCTGTTCCATATCTCCATCAAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAACATCATTTCTCCCAACTTTTTAGGGAGAAAGGGAGCTATAGTCATCTTATCAAGTCTGCATCGATGAAACGAGCAGCAGCCGCATCTGTTCCAGAATCCTAA 573 0.4485 MSFIGTQQKCKACEKTVYPVDQLSADGAAYHKACFRCSHCKGTLKLSSYSSMEGVLYCKPHYEQLFKETGSFNKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFREKGSYSHLIKSASMKRAAAASVPES 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1554 190 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Sto5g1554 190 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 190 - -
Sto5g1554 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Sto5g1554 190 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Sto5g1554 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Sto5g1554 190 SMART lim_4 9 61 IPR001781 -
Sto5g1554 190 SMART lim_4 107 159 IPR001781 -
Sto5g1554 190 CDD LIM2_SF3 108 168 - -
Sto5g1554 190 PANTHER OS06G0237300 PROTEIN 1 190 IPR045268 GO:0051015
Sto5g1554 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Sto5g1554 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Sto5g1554 190 Gene3D Cysteine Rich Protein 4 74 - -
Sto5g1554 190 Gene3D Cysteine Rich Protein 102 172 - -
Sto5g1554 190 CDD LIM1_SF3 6 68 - -
Sto5g1554 190 Pfam LIM domain 108 163 IPR001781 -
Sto5g1554 190 Pfam LIM domain 10 65 IPR001781 -
Sto5g1554 190 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1554 Sto-Chr5 10801243 10803350 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto5g1554 LIM 1.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1554 K09377 - gmx:100809121 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1554 5 10801243 10803350 Sto5g1554 5 10801243 10803350 ECH