Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1550 ATGCCAATAAACTCAGACTGGTTTGTGCAAGAGAGTCACACGGAATGGACAAAAGAGGAGAACAAGAGGTTTGAGAGTGCTCTGGCCATATATGACAAGGACACTCCGGACAGGTGGCTCAAGGTGGCTGCCATGATTCCTGGGAAGACCGTGTACGATGTGATCAAGCAGTACAAGGAATTGGTCCAAGACATCGGCGAGATCGAGGCCGGCCGCGTCCCCCTTCCCGGCTACGATCATCTCCCCTCTTCTTTCGCCTTTCAGCTTCTtcatcatcaccaccaccaacacAACTATGATGATGCTCATTACTGCAGAAAGAGGCCTCCTGTCCCTTTCAAAGGGTGTGATCAAGAGAGGAAGAAAGGTGTCCCTTGGACCGAAGAGGAACACAGGCGTTTTCTAATGGGACTAATGAAGTATGGGAAAGGGGATTGGAGGAACATTTCTAGGAATTTTGTGGTGACAAAGACGCCAACACAAGTGGCGAGTCATGCTCAGAAGTACTACATAAGACAGAAGCTTTCTGGaggaaacaacaacaacaacaacagcagcaacaataacaataacagcagcagcaacaacaacaacaaaagaaGACCAAGCATTCATGACATAACCATTCTTAATCTCACAGAATCTTCAACCTCATCAGAAGATAATAACAAGCCCCTTCTCTTCAATCACAAATTACCAAATGATGGGGTTTTCAATTTCAATccaaatttttcttcaaaactCCAAGAACAGGATCTTTATGACTCTGCTCTTCATGAGGCTTATAGTTATTACACCAATAAGGCTTCTGTTTTAGGTATTCATGCAttgtaa 834 0.3909 MPINSDWFVQESHTEWTKEENKRFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYKELVQDIGEIEAGRVPLPGYDHLPSSFAFQLLHHHHHQHNYDDAHYCRKRPPVPFKGCDQERKKGVPWTEEEHRRFLMGLMKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGNNNNNNSSNNNNNSSSNNNNKRRPSIHDITILNLTESSTSSEDNNKPLLFNHKLPNDGVFNFNPNFSSKLQEQDLYDSALHEAYSYYTNKASVLGIHAL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1550 277 CDD SANT 15 62 IPR001005 -
Sto5g1550 277 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 230 IPR043363 -
Sto5g1550 277 ProSiteProfiles SANT domain profile. 126 174 IPR017884 -
Sto5g1550 277 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Sto5g1550 277 Pfam Myb-like DNA-binding domain 125 169 IPR001005 -
Sto5g1550 277 Pfam Myb-like DNA-binding domain 15 60 IPR001005 -
Sto5g1550 277 SMART sant 122 172 IPR001005 -
Sto5g1550 277 SMART sant 12 64 IPR001005 -
Sto5g1550 277 Gene3D - 124 175 - -
Sto5g1550 277 CDD SANT 125 169 IPR001005 -
Sto5g1550 277 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Sto5g1550 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Sto5g1550 277 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Sto5g1550 277 SUPERFAMILY Homeodomain-like 119 174 IPR009057 -
Sto5g1550 277 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 5 230 - -
Sto5g1550 277 ProSiteProfiles SANT domain profile. 11 61 IPR017884 -
Sto5g1550 277 Gene3D - 9 75 - -
Sto5g1550 277 SUPERFAMILY Homeodomain-like 14 65 IPR009057 -
Sto5g1550 277 MobiDBLite consensus disorder prediction 175 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1550 Sto-Chr5 10778314 10779622 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g1550 Myb_DNA-binding 3.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1550 - - gmx:778039 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1550 5 10778314 10779622 Sto5g1550 5 10778314 10779622 CCT
Sto8g1130 8 7168582 7171213 Sto5g1550 5 10778314 10779622 ECH
Sto1g2301 1 30991622 30992851 Sto5g1550 5 10778314 10779622 ECH
Sto9g2132 9 25087588 25090670 Sto5g1550 5 10778314 10779622 ECH
Sto5g4311 5 51869099 51870552 Sto5g1550 5 10778314 10779622 ECH
Sto5g1550 5 10778314 10779622 Sto5g1550 5 10778314 10779622 ECH