Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1543 ATGCAGAAGGAGGAGATGATGTCAGGGTTTTGTATGAGAGGAGGAAGTGTCAGTAGTAATAATAGTGGGACTAAGTGTGGGCGTTGGAATCCCACATCAGAGCAAGTGAAGCTTCTCACTCACCTCTTCAAGTCTGGGCTCAGAACTCCAACCACTGATCAGATCCAAAACATCTCTTCTCAGCTTAGCTTCTATGGTAAGATAGAGAGCAAGAACGTCTTCTACTGGTTTCAGAACCATAAGGCCAGGGAAAGACACAAGCGTCGCAAAATCTCCTTCCATCACAAGGATGATGATGATCTCACGAATATTCCTCGCCGTTCCTCAAGGAATTTTGCAGAGATGAATCATGTGTCGGAGCCAGAGAGAGTGATGGAGACTCTTCAACTCTTCCCCTTGAACTCCTTTGGTGAATCAGAAGCAGAGAAACTGAGAATGCAAGCAAATGATGAATGCTGGGATCATACTACTGTGTTTTCATACACAATGGGGGAGAAATTGGAGCACCCACCATTGGATTTGCGCTTGAGCTTCatgtaa 540 0.45 MQKEEMMSGFCMRGGSVSSNNSGTKCGRWNPTSEQVKLLTHLFKSGLRTPTTDQIQNISSQLSFYGKIESKNVFYWFQNHKARERHKRRKISFHHKDDDDLTNIPRRSSRNFAEMNHVSEPERVMETLQLFPLNSFGESEAEKLRMQANDECWDHTTVFSYTMGEKLEHPPLDLRLSFM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1543 179 CDD homeodomain 28 88 IPR001356 GO:0003677
Sto5g1543 179 Gene3D - 25 93 - -
Sto5g1543 179 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 168 IPR044555 GO:0003700|GO:0099402
Sto5g1543 179 SMART HOX_1 24 91 IPR001356 GO:0003677
Sto5g1543 179 PANTHER WUSCHEL-RELATED HOMEOBOX 7 8 168 - -
Sto5g1543 179 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Sto5g1543 179 SUPERFAMILY Homeodomain-like 21 92 IPR009057 -
Sto5g1543 179 MobiDBLite consensus disorder prediction 13 29 - -
Sto5g1543 179 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Sto5g1543 179 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1543 Sto-Chr5 10714771 10715386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1543 10 179 Wox Gene Family AT3G11260 56.216 1.00e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sto5g1543 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1543 - - gmx:100820304 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1543 5 10714771 10715386 Sto5g1543 5 10714771 10715386 CCT
Sto5g1543 5 10714771 10715386 Sto5g1543 5 10714771 10715386 ECH