Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1541 ATGGAGGCAAAGGAGCAAGATGTTTCGTTGGGAGCTAACAAGTTCCCCGAGAGGCAGCCGATCGGCACGGCGGCTCAGAGCCAAGACGACGGCAAGGACTACCAGGAGCCACCACCGGCGCCGCTGTTCGAGCCGTCTGAGCTCACCTCGTGGTCCTTCTACAGAGCCGGGATAGCCGAGTTCGTAGCCACTTTTCTCTTCCTCTACATCACAATCTTGACGGTCATGGGCGTCAGCAGAGCCGATAGCAAGTGTAAAACCGTCGGTATTCAAGGGATCGCTTGGGCGTTCGGGGGCATGATCTTCGCCCTCGTCTACTGCACAGCTGGAATCTCAGGCGGTCACATTAACCCAGCGGTGACGTTTGGGCTATTTTTGGCGAGGAAACTGTCGTTGACAAGGGCGTTGTTCTACATGGTGATGCAGTGTTTGGGTGCGATCTGTGGTGCGGgtgtggttaagggtttcgaaGGGAAGAGATTGTACGGCACTTTGGGCGGCGGCGCCAATTATGTGCACTCCGGCTACACCAAAGGCGACGGCCTCGGCGCTGAGATCGTTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCAGCCACCGACGCCAAGCGTAGCGCACGAGACTCCCACGTGCCCGTAAGTCACCAACGTCACGTgactaacaatttttttaaaaaattaattaaaaaaATTTTGGCACCCTTGCCAATTGGGTTCGCTGTTTTCTTGGTCCATTTAGCCACCATCCCTATCACCGGAACCGGAATCAACCCGGCTCGCAGTCTCGGAGCCGCCATCATCTTCAACGACGACCTTGGCTGGGATGAGCACTGGATTTTCTGGGTGGGACCATTCATTGGAGCATTTCTGGCAGCTGTGTACCACGTGGTGGTGATCAGGGCCATTCCTTTCAAGTCCAAGTGA 924 0.5314 MEAKEQDVSLGANKFPERQPIGTAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGKRLYGTLGGGANYVHSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPVSHQRHVTNNFFKKLIKKILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNDDLGWDEHWIFWVGPFIGAFLAAVYHVVVIRAIPFKSK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1541 307 Gene3D Glycerol uptake facilitator protein. 40 305 IPR023271 -
Sto5g1541 307 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 307 IPR034294 -
Sto5g1541 307 Pfam Major intrinsic protein 47 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 1 307 - -
Sto5g1541 307 SUPERFAMILY Aquaporin-like 51 300 IPR023271 -
Sto5g1541 307 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Sto5g1541 307 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 PRINTS Major intrinsic protein family signature 278 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 CDD MIP 55 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto5g1541 307 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1541 Sto-Chr5 10694671 10695818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1541 1 307 Major Intrinsic Protein MIP AT4G23400 80.456 8.96e-167 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1541 K09872 - gmx:100775766 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1541 5 10694671 10695818 Sto5g1541 5 10694671 10695818 CCT
Sto5g1541 5 10694671 10695818 Sto5g1541 5 10694671 10695818 ECH