Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1499 ATGTGGCTGTTGCTTTCTATAAATGATATGACTGCTCTCAAGTTTGTTGATCTTGTTCTTGGTACTAGTTTTCTCATTAGTGTTCCTGAATCAGGAAGTGCAGTGCGTTTTTCAAGgtTAAGGTTTGGACTTTGGATAGTCTTAATTTGGTGTTCTGGTTTGATGTTGGTGAGCGTTGAGCAAGGATGGAATCTAGGGATTACAACACAAGTCTGTAAGTTGTTGGCTGGGGTGGACTTTGGCATGTGCAGTGGTTCAAAAAGCAAACTCTCCCCCTCCTCAAACAACTTCATGGAAACCAAGTTTCAGAAGATGAATGATTTGTGTGATATGTCAGCTTTGCTTGAGTTGTGTGCAACTGATGATCTCGAATCTTTCAGAAGTGCAGTAGAAGACAAGGGTTTTGATGTGAAGGAGGCGAGCTTTTGGTATGGGAGAAGAATTGGATCAAGGAAGATGGGGTTGGAGAAGAGGACACCCCTCATGATTGCTTCCTTGTTCGGAAGCACCAAGGTGGCGAAGTATATTGTTGAATCAGGCCGAGTTGGTGATGTGAACATGGCTTGTGGTTCTGATCATGCTACTGCTCTCCACTGTGCTGTTGCTGGTGGTTCAGAGTCCTCACTTGAGCTTGTTAAGCTCTTGCTTGATGCACATGCAGATGCTGATTGTGTTGATGCTAGTGGTAATAAGCCTGTCAATCTGATTGCTCCTGCGTTTAGTTCTTCGTCAAATTCACGTAGGAAGGCGATTGAGTCTCTGCTGAGAGGTGAAATCATCAACCAGGAGGTGGAGCAACAGATAATTGCAGCAGCACCATCATCAAAAgaaggagagaagaaagaatATCCTGTTGATATATCATTGCCTGACATAAACAATGGTATATACGGGACCGATGAGTTTAGGATGTATAGTTTCAAGGTTAAGCCGTGTTCGAGGGCATACTCTCACGATTGGACTGAGTGTCCATTTGTTCATCCGGGGGAGAATGCTAGGAGGAGAGACCCAAGGAAGTACCCTTATAGCTGTGTCCCGTGTCCTGAGTTTCGTAAAGGAGCCTGCCAGAAAGGGGATGCCTGTGAGTATGCACACGGCGTTTTCGAGTCATGGCTCCATCCTGCTCAATACAGAACAAGGCTCTGCAAGGATGAGACTGGGTGCTCAAGGAAAGTGTGCTTCTTTGCTCACAAACCTGAGGAGTTACGTCCAGTGTATGCTTCCACTGGATCAGCTATGCCTTCGCCAAAATCCTTTTCGGCCAGTGCACTTGACACAACTGCTATGAGTCCATTGGCTCTGAGTTCCTCATCTGTGCCTATGTCAACTGTTTCAACACCTCCTTTGTCTCCTTTGGCAGCTTCCtctcccaagagtggaagcttatGGCAGAACAAGATAAACCTCACACCACCATCATTGCAGCTCCCAGGTAGTCGGCTCAAGGCTGCTTTGAGTGCTAGGGATCTTGATCTTGAAATGGAACTGCTTGGACTGGAAAGTCCTGCTAGCCAGCACCACCAATTAATGGAAGAGATTACACGAATCTCTTCGCCATCTTTCCGGAACAAAGAATATAGTAGGATTGGTGATTTGAAGCCAAATAACCTTGATGACCTATTGGGATCTGTTGATCCTTCTGTTCTATCTCAACTTCATGGCCTGCAATCTCCAAATGGGCTTCAGATTCGCCAAAACATGAACCACCTTCGTTCAAGCTATCCAACGACCAATCTCCCTTCCTCACAGGCGAGAAACCCTTCGGTTTTCGGATTTGATTCATCAGCTGCTGTGGCAGCAGCAGTGATGAATTCAAGATCTGCAGCCTTCGCAAAGAGAAGCCAAAGTTTTATTGATCGTGGGGTGATGCCGATGACCAACCATATTGGACTGTCTTCACCTTCCCACCCCAACTGTAGGGTCTCCTCTGGTCTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGTATGAATGGAGATGAGCTGAACAAACTGAAGAAATCTGCATCTTTTGGTATTAGAAATAGTGCAAATTTTGTGGCACAGTCAGAAAATTTGGAGCCAGATGTGTCTTGGGTCCATTCATTGGTTAAAGATGTTCCCTCTGAGAAGCTGAAGCAGCAGTATGATCTGAATAGAGAGATGGTTTCACCGTGGATGGAGCAAATGTATAGAGAACAGGAGCAGATGGTGGCATAA 2205 0.4485 MWLLLSINDMTALKFVDLVLGTSFLISVPESGSAVRFSRLRFGLWIVLIWCSGLMLVSVEQGWNLGITTQVCKLLAGVDFGMCSGSKSKLSPSSNNFMETKFQKMNDLCDMSALLELCATDDLESFRSAVEDKGFDVKEASFWYGRRIGSRKMGLEKRTPLMIASLFGSTKVAKYIVESGRVGDVNMACGSDHATALHCAVAGGSESSLELVKLLLDAHADADCVDASGNKPVNLIAPAFSSSSNSRRKAIESLLRGEIINQEVEQQIIAAAPSSKEGEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASALDTTAMSPLALSSSSVPMSTVSTPPLSPLAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLESPASQHHQLMEEITRISSPSFRNKEYSRIGDLKPNNLDDLLGSVDPSVLSQLHGLQSPNGLQIRQNMNHLRSSYPTTNLPSSQARNPSVFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGVMPMTNHIGLSSPSHPNCRVSSGLSDWRSPDGKLDWGMNGDELNKLKKSASFGIRNSANFVAQSENLEPDVSWVHSLVKDVPSEKLKQQYDLNREMVSPWMEQMYREQEQMVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1499 734 ProSiteProfiles Ankyrin repeat region circular profile. 192 226 - -
Sto5g1499 734 PANTHER UNKEMPT FAMILY MEMBER 99 733 IPR045234 -
Sto5g1499 734 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 99 733 - -
Sto5g1499 734 Pfam Ankyrin repeats (3 copies) 149 223 IPR002110 GO:0005515
Sto5g1499 734 Gene3D - 342 404 - -
Sto5g1499 734 SMART c3hfinal6 341 367 IPR000571 GO:0046872
Sto5g1499 734 SMART c3hfinal6 376 399 IPR000571 GO:0046872
Sto5g1499 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 366 IPR000571 GO:0046872
Sto5g1499 734 Gene3D - 86 262 IPR036770 -
Sto5g1499 734 ProSiteProfiles Ankyrin repeat profile. 192 227 IPR002110 GO:0005515
Sto5g1499 734 SUPERFAMILY Ankyrin repeat 71 234 IPR036770 -
Sto5g1499 734 SMART ANK_2a 192 224 IPR002110 GO:0005515
Sto5g1499 734 SMART ANK_2a 156 187 IPR002110 GO:0005515
Sto5g1499 734 ProSiteProfiles Zinc finger C3H1-type profile. 341 368 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1499 Sto-Chr5 10356245 10365513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1499 71 706 C2H2 Transcription Factor Family AT5G12850 39.915 9.03e-135 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto5g1499 Ank_2 3.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1499 - - gmx:100783376 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2546 9 28068583 28070803 Sto5g1499 5 10356245 10365513 ECH
Sto5g1499 5 10356245 10365513 Sto5g1499 5 10356245 10365513 ECH