Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1490 ATGGACAAGGCAGCCTTACTAGGAAGTGTGATAGAGCATGTGAAGGATCTGAAACGAAAAGCCATGGATATAGGAACAAGCCTCACAGTTCCCACAGAGATTGATGAAGTATTAATAGACCATGACCCCCAAGAAGCAGGtgatagtaataataataaagtgaatTTCAAATTGAAGAGTATTAGTAATAGTAGTAAGATAGTGATAAAGGCTTCAGTTTGCTGTGAGGATAGGCCAGAACTATTCTCAGAACTGATTCAAGTGCTGAAGGGTCTAAAACTAACAGCAGTAAAAGCAGAGATAGGAAGCGTGGGAGGAAGAATCAAAAGCATTTTGGTGCTTTGTTCTAAGGAAATTGAACAAGACAGTGTTTGCCTCACCACTCTTAAGCACTCTCTCAAATCAGCTGTCACTAAAAttgctgcttcttcttcctcttctcttgcATCAAATTCTCCTGCTAGAAGTAAGAGGCAGAGGTTTTGGGCGTCCTATGAGATTTTTATGATGGGTGTTCCTTCCACCAATGCGGCTAATTCCGATAGGGTGAAAGGATCTTGGAGCCCTCAAGAGGACGCTACTCTCGTGAAGCTCGTCCAGCAGCACGGCCCGCGCAATTGGTCTCTCATCAGCGTCGGAATCCCCGGCCGCTCCGGCAAGTCCTGCCGCCTTCGATGGTGCAATCAGCTCAGCCCCACCGTCCAGCACCGGCCATTTACTCCCGCCGAGGACGCCGTCATCGTCCAGGCTCACGCTCTCCACGGCAACAAGTGGGCCACCATTGCCCGCCTCTTGCCTGGCCGTACCGATAATTCCATCAAGAACCACTGGAACTCCACCCTCCGCCGCCGCCGCGCCGCAGATATGTCGTCGGCCTCCGGGTCGTCGGAGTCGGACTCGTTTTTGGTGACGAAGAAGCGGCCGTCGGAGATTTCGGAGTCGGGGCAGCAAGTGAAGCGGCAGTGCGTCCGTCGGATCTCACCGGAAAATAACGGCTGCGGGGATCCGACGGAGGAGAAGGGGTTGCCGGCAGGGCCTGTGACGACGTCGTTGAGTTTGTTGCCGCCGGGGGAGAGAGCGGCTCCGGCGAGTAACGAAgtgaaagaagagaggaagaatgaGGAAGAGAAAGGTGATGATAATGGAGGAGAAggtgaaggagaaaagaaggggaaggaagaggaggagtCGTGCCTAATGAGGATGATGCAGCGCATGATAGCAGCGGAGGTTAGGAATTACATCGATAATTTGCGGGCCGATAATAGGCTTGTCCTTAGAACTGAAATGGGCCTTGGGCCTGATCCATCCATTCATAAAGTAAAACTCTTCTAA 1335 0.4772 MDKAALLGSVIEHVKDLKRKAMDIGTSLTVPTEIDEVLIDHDPQEAGDSNNNKVNFKLKSISNSSKIVIKASVCCEDRPELFSELIQVLKGLKLTAVKAEIGSVGGRIKSILVLCSKEIEQDSVCLTTLKHSLKSAVTKIAASSSSSLASNSPARSKRQRFWASYEIFMMGVPSTNAANSDRVKGSWSPQEDATLVKLVQQHGPRNWSLISVGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDAVIVQAHALHGNKWATIARLLPGRTDNSIKNHWNSTLRRRRAADMSSASGSSESDSFLVTKKRPSEISESGQQVKRQCVRRISPENNGCGDPTEEKGLPAGPVTTSLSLLPPGERAAPASNEVKEERKNEEEKGDDNGGEGEGEKKGKEEEESCLMRMMQRMIAAEVRNYIDNLRADNRLVLRTEMGLGPDPSIHKVKLF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1490 444 CDD SANT 238 281 IPR001005 -
Sto5g1490 444 Pfam Myb-like DNA-binding domain 184 230 IPR001005 -
Sto5g1490 444 Pfam Myb-like DNA-binding domain 238 280 IPR001005 -
Sto5g1490 444 MobiDBLite consensus disorder prediction 363 395 - -
Sto5g1490 444 PANTHER TRANSCRIPTION FACTOR MYB73 178 407 - -
Sto5g1490 444 ProSiteProfiles Myb-like domain profile. 179 230 IPR001005 -
Sto5g1490 444 MobiDBLite consensus disorder prediction 284 324 - -
Sto5g1490 444 Gene3D - 183 235 - -
Sto5g1490 444 Gene3D - 238 284 - -
Sto5g1490 444 SUPERFAMILY Homeodomain-like 181 277 IPR009057 -
Sto5g1490 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 230 IPR017930 -
Sto5g1490 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 285 IPR017930 -
Sto5g1490 444 MobiDBLite consensus disorder prediction 269 395 - -
Sto5g1490 444 PANTHER MYB PROTEIN-RELATED 178 407 - -
Sto5g1490 444 CDD SANT 186 228 IPR001005 -
Sto5g1490 444 CDD ACT_UUR-ACR-like 72 107 - -
Sto5g1490 444 SMART sant 183 232 IPR001005 -
Sto5g1490 444 SMART sant 235 283 IPR001005 -
Sto5g1490 444 ProSiteProfiles Myb-like domain profile. 231 281 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1490 Sto-Chr5 10279184 10285739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1490 179 284 MYB Transcription Factor Family AT4G37260 72.642 9.12e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g1490 Myb_DNA-binding 1.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1490 5 10279184 10285739 Sto5g1490 5 10279184 10285739 CCT
Sto5g1490 5 10279184 10285739 Sto5g1490 5 10279184 10285739 ECH