Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1489 ATGTCGAGACAGCAAGACGCTCAGGTATTCAATTGGCACTATTCGGAGCTGGATGAGCGAAACCTCGAAGTTCGCGGCCGGAAggtcttcttcatcatcatccttTTCTGCGTGATCCTTCTAGTTACGCTTCTCTTTCTCTGCGCCCGATGGATCTGCCGGTACCGCCACCATCTTCCAACCACCTTCCACTCGATCCAGGTGCGCCACGCGCCGTCGCCTCCGCCGCAGGGTCTGGACCTCGCGTCGATCAAGAAATTGCCGATAATCTTGCACCAGGCGCCGTCGGATTCCGCCGATTGCGCACTGGAGGAAACAGAGTGCTGTATTTGCCTCGGTCCGTTCGAAGATGGCGAGAAACTGAAGGTGCTTCCCGCTTGCAATCATTGCTTCCATTGCGAGTGTGTGGATAACTGGCTTATTAATCGCTCCAGTTGTCCGCTCTGCAGATCTTCTCTCAAAGTGGACGATTCTACGTTTccacaaattttgattgaagaaCCTCCGATCAGAATCGATCTTCAATTCtga 531 0.4953 MSRQQDAQVFNWHYSELDERNLEVRGRKVFFIIILFCVILLVTLLFLCARWICRYRHHLPTTFHSIQVRHAPSPPPQGLDLASIKKLPIILHQAPSDSADCALEETECCICLGPFEDGEKLKVLPACNHCFHCECVDNWLINRSSCPLCRSSLKVDDSTFPQILIEEPPIRIDLQF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1489 176 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Sto5g1489 176 Pfam Ring finger domain 107 150 IPR001841 -
Sto5g1489 176 SUPERFAMILY RING/U-box 101 162 - -
Sto5g1489 176 PANTHER RING-H2 FINGER PROTEIN ATL66 3 164 - -
Sto5g1489 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 164 IPR044675 -
Sto5g1489 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 156 IPR013083 -
Sto5g1489 176 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1489 Sto-Chr5 10268841 10269371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1489 5 159 C3H Transcription Factor Family AT3G11110 43.478 3.38e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1489 - - gmx:100803278 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1489 5 10268841 10269371 Sto5g1489 5 10268841 10269371 CCT