Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1480 ATGGCTCCCAACCTCGAATGTCGCATGTACGAGGCCAAGTACCCTGAGGTCGACATGGCCGTCATGATACAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCTCTGCTCGAGTACAACAACATCGAGGGCATGATCTTGTTCTCCGAGCTCTCGCGCCGCCGGATTCGCAGTGTTAGCAGCCTCATCAAGGTTGGCCGCATCGAGCCTGTCATGGTTCTCAGGGTTGATAAGGAAAAGGGCTACATCGATTTGAGCAAGAGGAGGGTCTCTGAAGAGGATATCCAGGCTTGCGAGGAGAGGTACAACAAGAGCAAGCTTGTCCACTCCATCATGCGTCACGTTGCTGAGACTGAGAATATCGATTTGGAGAGAGTATGTGTGAACTGTGAAGAACTTTATGTCCACATTGGATGGCCTTTATACCGCAAATATGGTCATGCTTTTGAGGCATTTAAAATAATTGTGACTGATCCTGATTCAGTTTTGAATTCTCTCACCCGTGAAATCAAGGAGGTTGGCCCTGATGGGCAGGAGGTGACCAAGGTGGTTCCAGCTGTATCAGAAGAAGTGAAGGAAGGTCtagtaaaaaatattaaaaggcgAATGACCCCCCAGCCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAGTTTGATGGAGTTCTTCACATTAAGGAGGCAATGCGGAAAGCAGAAGCTGCTGGAAATCATGATTGTCCTGTAAAGATTAAACTTGTTGCTCCCCCACTTTATGTTCTTACCACTCAGACTCTTGACAAGGAGCAAGGAATATTGGTTCTCAACAATGCTATTGTGGCTTGCACTGAAGCAATTGAGCAACACAAGGGTAAACTTAACGTGAAGGAGGCACCTAGAGCTGTGAGTGAACGTGATGATAAATTGCTCGCTGAACACATGGCTAAGCTACGCCAAGATAACGAGGAGATCAGTGGTGATGAAGAcagtgaagaggaagaagatacAGGAATGGGAGAGGTTGATGTGGAGAACCATGGTGCTGGGATAACAGATTGA 1047 0.4546 MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETENIDLERVCVNCEELYVHIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREIKEVGPDGQEVTKVVPAVSEEVKEGLVKNIKRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNHDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIVACTEAIEQHKGKLNVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENHGAGITD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1480 348 SUPERFAMILY eIF-2-alpha, C-terminal domain 207 323 IPR024055 -
Sto5g1480 348 Gene3D EIF_2_alpha 209 331 IPR024055 -
Sto5g1480 348 Gene3D - 3 91 IPR012340 -
Sto5g1480 348 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Sto5g1480 348 PANTHER BNAC04G04870D PROTEIN 2 347 - -
Sto5g1480 348 Pfam Eukaryotic translation initiation factor 2 alpha subunit 134 264 IPR011488 GO:0003723|GO:0003743
Sto5g1480 348 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Sto5g1480 348 MobiDBLite consensus disorder prediction 320 335 - -
Sto5g1480 348 Coils Coil 310 330 - -
Sto5g1480 348 SMART S1_6 16 89 IPR022967 -
Sto5g1480 348 MobiDBLite consensus disorder prediction 312 348 - -
Sto5g1480 348 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 2 347 IPR011488 GO:0003723|GO:0003743
Sto5g1480 348 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 203 IPR024054 -
Sto5g1480 348 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Sto5g1480 348 SUPERFAMILY eIF2alpha middle domain-like 91 203 IPR024054 -
Sto5g1480 348 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1480 Sto-Chr5 10180914 10184596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1480 2 346 Eukaryotic Initiation Factors Gene Family AT5G05470 78.902 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1480 K03237 - gmx:100805950 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2567 9 28234308 28243891 Sto5g1480 5 10180914 10184596 ECH
Sto5g1480 5 10180914 10184596 Sto5g1480 5 10180914 10184596 ECH