Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1479 ATGGGCGGAATCCCCCCTTGTGCTTCATGCAAGTTGCTACGACGCCGTTGCGCCGAAAATTGCATCTTCGCTCCTTATTTCCCTTCCGATGACCCCCAAAAGTTCGCCATCGTTCACAAGGTGTTCGGCGCTAGCAACGTCGGAAAGATGCTGCAGGAACTTCGAGCTGAGCAGAGAGCCGATGCAGTGAGCAGTTTAGTGTATGAAGCAAATGCGAGAGTGAGGGATCCAGTATATGGCAGCTTGGAGTCAGCCTCAAGGATTACCCTTCTAAATCCCAAGTCACGAGCCAATAAGATCCCTTCAACCAAAACCTTACCTCTGCTAGAACTAGGCTGCACCGTTTCAAAAATGACTGAAGCAGAATGA 369 0.5014 MGGIPPCASCKLLRRRCAENCIFAPYFPSDDPQKFAIVHKVFGASNVGKMLQELRAEQRADAVSSLVYEANARVRDPVYGSLESASRITLLNPKSRANKIPSTKTLPLLELGCTVSKMTEAE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1479 122 Pfam Lateral organ boundaries (LOB) domain 6 86 IPR004883 -
Sto5g1479 122 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Sto5g1479 122 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 3 86 - -
Sto5g1479 122 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1479 Sto-Chr5 10168396 10174109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1479 3 88 AS2 family AT2G30130 77.907 1.59e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto5g1479 LOB 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1479 - - tcc:18591018 151.369