Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto5g1478 | ATGGACTCCGACTTTCCCAACAAAGCGTTAACGAGCACGCGATTCTCCGAGCTGAACCCGCCACTTTCTGAACCGGTTCTCGAGGCCCTATCAGAGTCTGGGTTCGACTTCTGCACGCCCGTCCAAGTCGCCACCATACCTTTGCTATGCAGTTTCAAGGACGTTGCCGTCGACGCCGCCACCGGTTCCGGAAAAACCCTCGCATTTGTCGTTCCACTTGTTGAGATTCTACGCCGCGCCTGTTCTAATCCTAAACCTCATCAGGTACTTGGAATAATTATATCGCCCACAAGGGAGCTATCATCCCAAATATACCATGTTGCACAACCTTTCATTAAAACTTTAGTTAATGCCAAGTCCATGCTCCTCGTTGGTGGAGTAGACGTTAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAATATATTGATTGGCACACCTGGGCGGTTATACGACATAATGGATAGGATGGATATATTGGATTTTAAAAACCTTGAGattttaattttggatgAGGCTGATAGACTCCTAGATATGGGTTTCCAGAAGCAGTTAAGTTCCATTATATCTCTCTTACCAAAGCTTCGCAGAACGGGTCTTTTCTCTGCTACTCAAACTGAGGCTGTCGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGGGCAGAATCAAAACCAGCAAATGATCCTGCAGCACATCAACTAGCCTCTTCAAAGACACCATCAGGACTGCACATTGAGTATTTGGAATGTGAGCCTGATAAGAAACCATCACAGCTTATAGATCTCCTAATGAAGAACCGCACACAAAAAGTGATAATATATTTCATGACTTGTGCCTGTGTTGACTATTGGGGAGTTGTGCTTCCTCGCCTTTCTGCTTTGAAAGGCTTCTCCTTGATCCCACTTCATGGAAAGATGAAGCAGGCTGCCAGGGAGAAAGCATTAGCTTCATTTACATCTCTATCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTTGACATACCAGGTGTCGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGACGAACTGCTCGGCTCGGTAAGCAAGGACATGCCATTGTCTTCTTATTACCAAAGGAGGAATCTTATGTTGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAAGTTGCTCTAATGATGCACCTGATGTTGTTCCTCAGATTCGTTGTGCTGCAAAAAAAGATCGTGATGTAATGGAGAAAGGACTCAGGGCATTTGTTTCTTATATTCGTGCATATAAAGAGCATCTCTGCTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTATTGCAGCTTCCTTCAATGTCAGAGATTAAACAGCAGTCACTTTCTACCGAGGGTTTTGTACCAGTTGAAGACATTAATTTTGAGGACATTAAATACagGGATAAATCTCGTGAGAAACAAAGGAAGAAAAACTTGCAAGCAAAGAAAGAAGCCAAAGAGAAGGAGGCAAAACCTCAAAAACCCAACAAAACCCCAAATGCAGCTACTGTAACAAAGAAGAAAACAGCTCGACAGAGACGTGCTCGGCAGACcgttgaagatgaagatgagttGACGCGAGAATACCGgttgttgaaaaaattaaaaaaagggagAATAGATGAGGATGAATATGCTAAGTTAACTGGCACTGACGAATTACTTTGA | 1767 | 0.4194 | MDSDFPNKALTSTRFSELNPPLSEPVLEALSESGFDFCTPVQVATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRACSNPKPHQVLGIIISPTRELSSQIYHVAQPFIKTLVNAKSMLLVGGVDVKADMKKIEEEGANILIGTPGRLYDIMDRMDILDFKNLEILILDEADRLLDMGFQKQLSSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKPANDPAAHQLASSKTPSGLHIEYLECEPDKKPSQLIDLLMKNRTQKVIIYFMTCACVDYWGVVLPRLSALKGFSLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRIRRVPLQERSCSNDAPDVVPQIRCAAKKDRDVMEKGLRAFVSYIRAYKEHLCSYIFRWKELEIGKLAMGYGLLQLPSMSEIKQQSLSTEGFVPVEDINFEDIKYRDKSREKQRKKNLQAKKEAKEKEAKPQKPNKTPNAATVTKKKTARQRRARQTVEDEDELTREYRLLKKLKKGRIDEDEYAKLTGTDELL | 588 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto5g1478 | 588 | Pfam | DEAD/DEAH box helicase | 39 | 213 | IPR011545 | GO:0003676|GO:0005524 | |
Sto5g1478 | 588 | MobiDBLite | consensus disorder prediction | 503 | 527 | - | - | |
Sto5g1478 | 588 | PANTHER | RNA HELICASE | 25 | 585 | - | - | |
Sto5g1478 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 224 | IPR014001 | - | |
Sto5g1478 | 588 | MobiDBLite | consensus disorder prediction | 503 | 557 | - | - | |
Sto5g1478 | 588 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 90 | 393 | IPR027417 | - | |
Sto5g1478 | 588 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX55 | 25 | 585 | - | - | |
Sto5g1478 | 588 | Gene3D | - | 3 | 227 | IPR027417 | - | |
Sto5g1478 | 588 | SMART | DUF4217_3 | 412 | 475 | IPR025313 | - | |
Sto5g1478 | 588 | SMART | ultradead3 | 34 | 240 | IPR014001 | - | |
Sto5g1478 | 588 | Gene3D | - | 254 | 490 | IPR027417 | - | |
Sto5g1478 | 588 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
Sto5g1478 | 588 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | IPR000629 | - | |
Sto5g1478 | 588 | Pfam | Helicase conserved C-terminal domain | 262 | 374 | IPR001650 | - | |
Sto5g1478 | 588 | CDD | DEADc_DDX55 | 26 | 224 | - | - | |
Sto5g1478 | 588 | Pfam | Domain of unknown function (DUF4217) | 416 | 473 | IPR025313 | - | |
Sto5g1478 | 588 | Coils | Coil | 502 | 524 | - | - | |
Sto5g1478 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 265 | 421 | IPR001650 | - | |
Sto5g1478 | 588 | SMART | helicmild6 | 292 | 374 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto5g1478 | Sto-Chr5 | 10163558 | 10167240 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto5g1478 | 22 | 388 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 29.620 | 2.53e-44 | 161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto5g1478 | K14809 | - | gmx:100801482 | 965.681 |