Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1478 ATGGACTCCGACTTTCCCAACAAAGCGTTAACGAGCACGCGATTCTCCGAGCTGAACCCGCCACTTTCTGAACCGGTTCTCGAGGCCCTATCAGAGTCTGGGTTCGACTTCTGCACGCCCGTCCAAGTCGCCACCATACCTTTGCTATGCAGTTTCAAGGACGTTGCCGTCGACGCCGCCACCGGTTCCGGAAAAACCCTCGCATTTGTCGTTCCACTTGTTGAGATTCTACGCCGCGCCTGTTCTAATCCTAAACCTCATCAGGTACTTGGAATAATTATATCGCCCACAAGGGAGCTATCATCCCAAATATACCATGTTGCACAACCTTTCATTAAAACTTTAGTTAATGCCAAGTCCATGCTCCTCGTTGGTGGAGTAGACGTTAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAATATATTGATTGGCACACCTGGGCGGTTATACGACATAATGGATAGGATGGATATATTGGATTTTAAAAACCTTGAGattttaattttggatgAGGCTGATAGACTCCTAGATATGGGTTTCCAGAAGCAGTTAAGTTCCATTATATCTCTCTTACCAAAGCTTCGCAGAACGGGTCTTTTCTCTGCTACTCAAACTGAGGCTGTCGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGGGCAGAATCAAAACCAGCAAATGATCCTGCAGCACATCAACTAGCCTCTTCAAAGACACCATCAGGACTGCACATTGAGTATTTGGAATGTGAGCCTGATAAGAAACCATCACAGCTTATAGATCTCCTAATGAAGAACCGCACACAAAAAGTGATAATATATTTCATGACTTGTGCCTGTGTTGACTATTGGGGAGTTGTGCTTCCTCGCCTTTCTGCTTTGAAAGGCTTCTCCTTGATCCCACTTCATGGAAAGATGAAGCAGGCTGCCAGGGAGAAAGCATTAGCTTCATTTACATCTCTATCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTTGACATACCAGGTGTCGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGACGAACTGCTCGGCTCGGTAAGCAAGGACATGCCATTGTCTTCTTATTACCAAAGGAGGAATCTTATGTTGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAAGTTGCTCTAATGATGCACCTGATGTTGTTCCTCAGATTCGTTGTGCTGCAAAAAAAGATCGTGATGTAATGGAGAAAGGACTCAGGGCATTTGTTTCTTATATTCGTGCATATAAAGAGCATCTCTGCTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTATTGCAGCTTCCTTCAATGTCAGAGATTAAACAGCAGTCACTTTCTACCGAGGGTTTTGTACCAGTTGAAGACATTAATTTTGAGGACATTAAATACagGGATAAATCTCGTGAGAAACAAAGGAAGAAAAACTTGCAAGCAAAGAAAGAAGCCAAAGAGAAGGAGGCAAAACCTCAAAAACCCAACAAAACCCCAAATGCAGCTACTGTAACAAAGAAGAAAACAGCTCGACAGAGACGTGCTCGGCAGACcgttgaagatgaagatgagttGACGCGAGAATACCGgttgttgaaaaaattaaaaaaagggagAATAGATGAGGATGAATATGCTAAGTTAACTGGCACTGACGAATTACTTTGA 1767 0.4194 MDSDFPNKALTSTRFSELNPPLSEPVLEALSESGFDFCTPVQVATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRACSNPKPHQVLGIIISPTRELSSQIYHVAQPFIKTLVNAKSMLLVGGVDVKADMKKIEEEGANILIGTPGRLYDIMDRMDILDFKNLEILILDEADRLLDMGFQKQLSSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKPANDPAAHQLASSKTPSGLHIEYLECEPDKKPSQLIDLLMKNRTQKVIIYFMTCACVDYWGVVLPRLSALKGFSLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRIRRVPLQERSCSNDAPDVVPQIRCAAKKDRDVMEKGLRAFVSYIRAYKEHLCSYIFRWKELEIGKLAMGYGLLQLPSMSEIKQQSLSTEGFVPVEDINFEDIKYRDKSREKQRKKNLQAKKEAKEKEAKPQKPNKTPNAATVTKKKTARQRRARQTVEDEDELTREYRLLKKLKKGRIDEDEYAKLTGTDELL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1478 588 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Sto5g1478 588 MobiDBLite consensus disorder prediction 503 527 - -
Sto5g1478 588 PANTHER RNA HELICASE 25 585 - -
Sto5g1478 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Sto5g1478 588 MobiDBLite consensus disorder prediction 503 557 - -
Sto5g1478 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 393 IPR027417 -
Sto5g1478 588 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 585 - -
Sto5g1478 588 Gene3D - 3 227 IPR027417 -
Sto5g1478 588 SMART DUF4217_3 412 475 IPR025313 -
Sto5g1478 588 SMART ultradead3 34 240 IPR014001 -
Sto5g1478 588 Gene3D - 254 490 IPR027417 -
Sto5g1478 588 CDD SF2_C_DEAD 253 383 - -
Sto5g1478 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Sto5g1478 588 Pfam Helicase conserved C-terminal domain 262 374 IPR001650 -
Sto5g1478 588 CDD DEADc_DDX55 26 224 - -
Sto5g1478 588 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Sto5g1478 588 Coils Coil 502 524 - -
Sto5g1478 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 265 421 IPR001650 -
Sto5g1478 588 SMART helicmild6 292 374 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1478 Sto-Chr5 10163558 10167240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1478 22 388 Eukaryotic Initiation Factors Gene Family AT3G13920 29.620 2.53e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1478 K14809 - gmx:100801482 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1478 5 10163558 10167240 Sto5g1478 5 10163558 10167240 ECH