Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1454 ATGTCCAGAGAAAGGGAAAATTTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGTGATGTATCTTGGGGAATGGGAAGAAGACACATGCTAGGCCCTCCCGGAACCCTAAATACCATAACCCCTTGTGCAGCATGTAAGCTCTTGAGacgaagatgtgcccaagaatGTCCCTTTTCTCCCTATTTTTCCCCTCACGAGCCACAAAAGTTTGCTTCTGTCCACAAAGTCTTCGGTGCTAGCAACGTCTCCAAGATGCTCATGAGCCAAAGAGCAGATGCAGCAAATAGTCTAGTGTATGAGGCAAATGTGAGGCTAAGAGATCCAGTGTACGGATGCATGGGTGCAATTTCTGCTTTGCAACATCAAGTCCAATCTTTACAAGCTGAACTTAATGCAGTAAGGGCTGAAATACTTAAATACAAACTTAGGGAAGCTACTTCTACTACTAACATCATATCCTCCTCTCATCTTCATCATATTCCTCCTCCAATCCTCCCTAATAATTCTTCTGGGGCTGCAATTTCCATTGCTGTTccgccgccaccaccaccaccaccaccaccgcctcTGCCGCCTCCTACTTCTAATTCCTCTTCTTCCATGTACACCCAACTCCAACACAGGGTTCCCACCAATAATTATACCACTATTTCAAGTGATCATATTAATTcctattttggttaa 687 0.3901 MSRERENFDEIGKKIKREGDVSWGMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMSQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQAELNAVRAEILKYKLREATSTTNIISSSHLHHIPPPILPNNSSGAAISIAVPPPPPPPPPPPLPPPTSNSSSSMYTQLQHRVPTNNYTTISSDHINSYFG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1454 228 Coils Coil 117 144 - -
Sto5g1454 228 MobiDBLite consensus disorder prediction 177 196 - -
Sto5g1454 228 MobiDBLite consensus disorder prediction 172 204 - -
Sto5g1454 228 PANTHER LOB DOMAIN PROTEIN 25 227 - -
Sto5g1454 228 ProSiteProfiles LOB domain profile. 41 138 IPR004883 -
Sto5g1454 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 227 - -
Sto5g1454 228 Pfam Lateral organ boundaries (LOB) domain 42 135 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1454 Sto-Chr5 9971457 9972427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1454 1 152 AS2 family AT2G30340 66.265 1.44e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto5g1454 LOB 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1454 - - gmx:100790799 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1454 5 9971457 9972427 Sto5g1454 5 9971457 9972427 ECH