Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1427 ATGCTCAACCATAAAAAGACTCCAACTTTCTCAGAAAATTCTGCATTTACAAGAGCTttaatGTCAAACCGTCCAGACAATGAGACCATTGAAGGTAGAAGGAAGGACAAGTTTAATTTGTCTCTTGTAACCTTGGAGACAAGCTCGCATTATCCCCACAACCACGGGTCTCTTCTCTCTTTAGCCTACGAAACAACCACAGCTGCTGCTGATGCTCGCGGATCCTCTCCACTCTTCCTCGAGTTGAACTTCGCAGCAGCGactgctattattattattattattattattattattatgtcgtCGGAAGAAATTGGGCTCGTTCCTGATCAGAGGATCGATAACGGTCTTAATTCGCCCTTGGTGTTCCAAGACGACTCCCTGCGTTTCAGCTGCGGCGGTGCGCCGCAGCGTCGGGTCGGGGACCCGGGTCCGAAGACGAGGGAGCTTGGTAGTTTCATCGATGAAAAGATGTTCGCCGTGGAGCGTGACCGTTATTTCGCGGCCCAGGGGGTGGATTTCCGTCGGAATGTTTTCGGGGATTGCTCCGACCGGAGGAACCCGCCGGATGCCCGGAATTGGAACGGGAACGGGAGCACTGCGACTCCGAGCGGCGATGAATCGGACGGCGAGGATGATGAAGAcgatgaggaagatgacgatGACGATGATGTTGAAGATGACGCTGAAGTTGAAGGATTGGTTGGTGTCAACGATGCGAGCAAAGGGAATTCCAATTCAATCAATGATATTAACAATAGCAACATAAGCGGTAGTAACCTTTCTAGTGTTGCAGACAGAATATCGAACGGGAAAGCTCAGCATCGTTCGCCCTATGGATCCAATAGAGAGGTATTGGGGAAAGATGGAGAAATTGTGCAGATGGTGCATAATAATTCGAGGGGGAACGATGATGATCATCACCATGAAAGGTTAGATAAATCACATAGTGCGGTGACAATTGCTGAAACTGACTGTGAGGAGTATTATTCACATTATCTTCAAGGAACGGAGGGGTCAGCTTCTGTGCAGAAAGCTATGGCGGGGGAGAATGGTTGTGGGTTTAGCGGAAGAAAGGAAGTTATCTATTCAAGCGAGTCAGGGGAGTCATTGAGGGCTGTTCTTTCAGATCCTGTTACGGGAGCACTTATGGATGATGCAATGATATTGCCTTGCGGACATTCCTTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGTTGCACTTGTTCACAACCCGTATCTGAGGAATCAATATCTCCAAATCTATCACTTCGAGTTGCTGTGCAGGCATACCGTCGAGAAGAGGAATCACAGTTTTACCGGTCAtccaaaaaaagaagagaaagatttGATCAGGGTGGTTATGGTGATTCAGCCGTTCTGGAACAACCGAGGGGTAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTGGTTATAAAGATATTGATTGGAGGGAAATTGGAGCAGGGAAACAAGAGGACACCGCAGCGTTTTGTTGGACGAGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTAGTGAAGACACTGGACAATGCAGAGAGTGTAAAACTGCAGTATCGTTCCCTTGCCAAAGTTTCAGAAGACCCTTCAAAACCTGCCTCGAGCAAGATGGGAcctaattggctttaa 1677 0.4532 MLNHKKTPTFSENSAFTRALMSNRPDNETIEGRRKDKFNLSLVTLETSSHYPHNHGSLLSLAYETTTAAADARGSSPLFLELNFAAATAIIIIIIIIIIMSSEEIGLVPDQRIDNGLNSPLVFQDDSLRFSCGGAPQRRVGDPGPKTRELGSFIDEKMFAVERDRYFAAQGVDFRRNVFGDCSDRRNPPDARNWNGNGSTATPSGDESDGEDDEDDEEDDDDDDVEDDAEVEGLVGVNDASKGNSNSINDINNSNISGSNLSSVADRISNGKAQHRSPYGSNREVLGKDGEIVQMVHNNSRGNDDDHHHERLDKSHSAVTIAETDCEEYYSHYLQGTEGSASVQKAMAGENGCGFSGRKEVIYSSESGESLRAVLSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPVSEESISPNLSLRVAVQAYRREEESQFYRSSKKRRERFDQGGYGDSAVLEQPRGRGVQFPFAVMDRVVIKILIGGKLEQGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSEDPSKPASSKMGPNWL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1427 558 MobiDBLite consensus disorder prediction 178 259 - -
Sto5g1427 558 SUPERFAMILY RING/U-box 369 441 - -
Sto5g1427 558 MobiDBLite consensus disorder prediction 190 205 - -
Sto5g1427 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 440 IPR013083 -
Sto5g1427 558 ProSiteProfiles U-box domain profile. 370 442 IPR003613 GO:0004842|GO:0016567
Sto5g1427 558 MobiDBLite consensus disorder prediction 239 259 - -
Sto5g1427 558 MobiDBLite consensus disorder prediction 206 233 - -
Sto5g1427 558 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 156 558 - -
Sto5g1427 558 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 156 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1427 Sto-Chr5 9768048 9772439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1427 315 558 Plant U-box Gene Family AT5G05230 58.167 3.99e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1427 - - adu:107470194 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1427 5 9768048 9772439 Sto5g1427 5 9768048 9772439 ECH