Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1415 ATGGAGAAAGAGTTGATCGAACTATACGAAGCCGTGAAGAAGTCGGCGGATGCGGCGAGTTCAGTCGATGACAAACCTGAAGAAACTCGATGCATTGAAGCACTCCAACAGCTAAAGAAATTCCCCGTTAATTATCAGATTCTTGTTTCCACTCAGGTGGGCAAACATCTTAAACTTCTCACTAAACATCCAAGGAGAAAAATTCGTGCATTTGCTTCTGACCTAATTGAGATATGGAAAGAAATTATTATGAAGGAagtatataataataagaatgGGAAACCAGATAATGGTGAGACAGCTACAGCAGGGAAGCTTCAGAAGTCAACTTCAGTGAAGTTAGAGAAGGTGGTTGTAAAGGCTGAAACTACCAAGGTGGAGAAAACTGTCAGGAACTGTACATCAATCTCAGAAGATTCAAAGAAACTAGTACAGAAAACAGATTCTGCTTCCAAGGACAACAAACAAGCTTCTGGAGTGAAGAAAACAGCACCGAGCCCTACCGCACCCCCAAAGTTGAAGACTATGCTTAAATCTAATGATTCCACGAGAGACAAAATAAGGGAAATTCTCTTAGAAGCTTTGTCCAAGGTTTCTGAGGAGGCTGACGAAGAAATCATTGATCGAGTTCATACAAGTGACCCTATTCGGGTTGCTGTTACAGTGGAGTCTGTACTATTTCAAAAGTGGGGTTCTTCCGTTGGGACCCAAAAGGCCAAGTATAGGTCCTTAATGTTCAATCTAAAGGATAAAAACAACCCAGATTTTCGGAGAAAAGTTCTTCTCGGAGAGATTGAAGCAGAGAAGCTGATCAACATGAATGCGGTTGAAATGGCTAGTGATCAACGGAAGAAAGAGGTTgatgaaatgaagaagaaagctTTATTCGAGTGTGAGCGTTCAGAACGACCTAAAGCCACAACTGATCAATTTAAGTGTGGGAAATGTGGTGAAAGGCAGTGCACATATTCTCAAATGCAGACTCGCAGTGCTGATGAACCTATGACTACCTTCGTTGCATGCACATTTTGCGGCTCTTTCCCCTCATCCTCACCCATTATTGCTTCCCTCTCCAAACACTCCAACAACTCCACCACATCCTTCCTCTCTCCACATTTGTGCCTAAACCTCcccatctcttcttcttcctccaattctctctctaactctgCCTCCATACCCCAACTTGCAcatcccaccaccaccaccatctcctccttctcttttcTCATCTCCTTCACCAAACTCCATGAATGCCTCTTCACCTTCAACTTACAAGGCATCAAAGGGAGAAACGGAGTAAGAGTCATACTCGCACACTCAAGAACAGAGCAGGAGGCCATCACTCTCAAACATCAACCTCACTTTCTCGGGAGAGAGGACGAAGAGCTTCCGTTTCCGCTCCTCCAAACCGCCGCAGCTGCTGGTCAGCCTATCGCCGTCGCTGATTTCTTAAGAATTCCTGGCCTGGCCGTGAAGAAGATAAGggttaggattcTGGATTTGGCTGATTGTGTGAATCTCGCGTCAATTACTGATTACCAGTGCTCTATTTTTTGTGGGTACTGCGTATGA 1575 0.4089 MEKELIELYEAVKKSADAASSVDDKPEETRCIEALQQLKKFPVNYQILVSTQVGKHLKLLTKHPRRKIRAFASDLIEIWKEIIMKEVYNNKNGKPDNGETATAGKLQKSTSVKLEKVVVKAETTKVEKTVRNCTSISEDSKKLVQKTDSASKDNKQASGVKKTAPSPTAPPKLKTMLKSNDSTRDKIREILLEALSKVSEEADEEIIDRVHTSDPIRVAVTVESVLFQKWGSSVGTQKAKYRSLMFNLKDKNNPDFRRKVLLGEIEAEKLINMNAVEMASDQRKKEVDEMKKKALFECERSERPKATTDQFKCGKCGERQCTYSQMQTRSADEPMTTFVACTFCGSFPSSSPIIASLSKHSNNSTTSFLSPHLCLNLPISSSSSNSLSNSASIPQLAHPTTTTISSFSFLISFTKLHECLFTFNLQGIKGRNGVRVILAHSRTEQEAITLKHQPHFLGREDEELPFPLLQTAAAAGQPIAVADFLRIPGLAVKKIRVRILDLADCVNLASITDYQCSIFCGYCV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1415 524 CDD TFIIS_I 9 83 - -
Sto5g1415 524 TIGRFAM TFSII: transcription elongation factor S-II 16 345 IPR006289 GO:0003676|GO:0005634|GO:0006368
Sto5g1415 524 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Sto5g1415 524 ProSiteProfiles Zinc finger TFIIS-type profile. 309 349 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto5g1415 524 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Sto5g1415 524 MobiDBLite consensus disorder prediction 141 180 - -
Sto5g1415 524 Gene3D - 150 279 IPR036575 GO:0006351
Sto5g1415 524 SMART TFS2_5 8 85 IPR003617 GO:0005634
Sto5g1415 524 SMART Cys4_2 311 350 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto5g1415 524 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 344 - -
Sto5g1415 524 Gene3D - 280 347 - -
Sto5g1415 524 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 344 - -
Sto5g1415 524 SUPERFAMILY Elongation factor TFIIS domain 2 165 281 IPR036575 GO:0006351
Sto5g1415 524 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 20 97 IPR035441 -
Sto5g1415 524 Pfam Transcription factor S-II (TFIIS) 311 345 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto5g1415 524 Pfam Transcription factor S-II (TFIIS), central domain 180 297 IPR003618 GO:0006351
Sto5g1415 524 ProSiteProfiles TFIIS central domain profile. 183 306 IPR003618 GO:0006351
Sto5g1415 524 SMART mid_6 181 289 IPR003618 GO:0006351
Sto5g1415 524 CDD Zn-ribbon_TFIIS 304 345 - -
Sto5g1415 524 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 97 IPR035441 -
Sto5g1415 524 SUPERFAMILY Zinc beta-ribbon 290 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1415 Sto-Chr5 9689809 9696575 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sto5g1415 TFIIS_M 9.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1415 K03145 - gmx:100811982 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2624 9 28562003 28564544 Sto5g1415 5 9689809 9696575 ECH
Sto5g1415 5 9689809 9696575 Sto5g1415 5 9689809 9696575 ECH