Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto5g1415 | ATGGAGAAAGAGTTGATCGAACTATACGAAGCCGTGAAGAAGTCGGCGGATGCGGCGAGTTCAGTCGATGACAAACCTGAAGAAACTCGATGCATTGAAGCACTCCAACAGCTAAAGAAATTCCCCGTTAATTATCAGATTCTTGTTTCCACTCAGGTGGGCAAACATCTTAAACTTCTCACTAAACATCCAAGGAGAAAAATTCGTGCATTTGCTTCTGACCTAATTGAGATATGGAAAGAAATTATTATGAAGGAagtatataataataagaatgGGAAACCAGATAATGGTGAGACAGCTACAGCAGGGAAGCTTCAGAAGTCAACTTCAGTGAAGTTAGAGAAGGTGGTTGTAAAGGCTGAAACTACCAAGGTGGAGAAAACTGTCAGGAACTGTACATCAATCTCAGAAGATTCAAAGAAACTAGTACAGAAAACAGATTCTGCTTCCAAGGACAACAAACAAGCTTCTGGAGTGAAGAAAACAGCACCGAGCCCTACCGCACCCCCAAAGTTGAAGACTATGCTTAAATCTAATGATTCCACGAGAGACAAAATAAGGGAAATTCTCTTAGAAGCTTTGTCCAAGGTTTCTGAGGAGGCTGACGAAGAAATCATTGATCGAGTTCATACAAGTGACCCTATTCGGGTTGCTGTTACAGTGGAGTCTGTACTATTTCAAAAGTGGGGTTCTTCCGTTGGGACCCAAAAGGCCAAGTATAGGTCCTTAATGTTCAATCTAAAGGATAAAAACAACCCAGATTTTCGGAGAAAAGTTCTTCTCGGAGAGATTGAAGCAGAGAAGCTGATCAACATGAATGCGGTTGAAATGGCTAGTGATCAACGGAAGAAAGAGGTTgatgaaatgaagaagaaagctTTATTCGAGTGTGAGCGTTCAGAACGACCTAAAGCCACAACTGATCAATTTAAGTGTGGGAAATGTGGTGAAAGGCAGTGCACATATTCTCAAATGCAGACTCGCAGTGCTGATGAACCTATGACTACCTTCGTTGCATGCACATTTTGCGGCTCTTTCCCCTCATCCTCACCCATTATTGCTTCCCTCTCCAAACACTCCAACAACTCCACCACATCCTTCCTCTCTCCACATTTGTGCCTAAACCTCcccatctcttcttcttcctccaattctctctctaactctgCCTCCATACCCCAACTTGCAcatcccaccaccaccaccatctcctccttctcttttcTCATCTCCTTCACCAAACTCCATGAATGCCTCTTCACCTTCAACTTACAAGGCATCAAAGGGAGAAACGGAGTAAGAGTCATACTCGCACACTCAAGAACAGAGCAGGAGGCCATCACTCTCAAACATCAACCTCACTTTCTCGGGAGAGAGGACGAAGAGCTTCCGTTTCCGCTCCTCCAAACCGCCGCAGCTGCTGGTCAGCCTATCGCCGTCGCTGATTTCTTAAGAATTCCTGGCCTGGCCGTGAAGAAGATAAGggttaggattcTGGATTTGGCTGATTGTGTGAATCTCGCGTCAATTACTGATTACCAGTGCTCTATTTTTTGTGGGTACTGCGTATGA | 1575 | 0.4089 | MEKELIELYEAVKKSADAASSVDDKPEETRCIEALQQLKKFPVNYQILVSTQVGKHLKLLTKHPRRKIRAFASDLIEIWKEIIMKEVYNNKNGKPDNGETATAGKLQKSTSVKLEKVVVKAETTKVEKTVRNCTSISEDSKKLVQKTDSASKDNKQASGVKKTAPSPTAPPKLKTMLKSNDSTRDKIREILLEALSKVSEEADEEIIDRVHTSDPIRVAVTVESVLFQKWGSSVGTQKAKYRSLMFNLKDKNNPDFRRKVLLGEIEAEKLINMNAVEMASDQRKKEVDEMKKKALFECERSERPKATTDQFKCGKCGERQCTYSQMQTRSADEPMTTFVACTFCGSFPSSSPIIASLSKHSNNSTTSFLSPHLCLNLPISSSSSNSLSNSASIPQLAHPTTTTISSFSFLISFTKLHECLFTFNLQGIKGRNGVRVILAHSRTEQEAITLKHQPHFLGREDEELPFPLLQTAAAAGQPIAVADFLRIPGLAVKKIRVRILDLADCVNLASITDYQCSIFCGYCV | 524 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto5g1415 | 524 | CDD | TFIIS_I | 9 | 83 | - | - | |
Sto5g1415 | 524 | TIGRFAM | TFSII: transcription elongation factor S-II | 16 | 345 | IPR006289 | GO:0003676|GO:0005634|GO:0006368 | |
Sto5g1415 | 524 | Pfam | TFIIS helical bundle-like domain | 34 | 83 | IPR017923 | - | |
Sto5g1415 | 524 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 309 | 349 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
Sto5g1415 | 524 | ProSiteProfiles | TFIIS N-terminal domain profile. | 10 | 86 | IPR017923 | - | |
Sto5g1415 | 524 | MobiDBLite | consensus disorder prediction | 141 | 180 | - | - | |
Sto5g1415 | 524 | Gene3D | - | 150 | 279 | IPR036575 | GO:0006351 | |
Sto5g1415 | 524 | SMART | TFS2_5 | 8 | 85 | IPR003617 | GO:0005634 | |
Sto5g1415 | 524 | SMART | Cys4_2 | 311 | 350 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
Sto5g1415 | 524 | PANTHER | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | 1 | 344 | - | - | |
Sto5g1415 | 524 | Gene3D | - | 280 | 347 | - | - | |
Sto5g1415 | 524 | PANTHER | TRANSCRIPTION ELONGATION FACTOR TFIIS | 1 | 344 | - | - | |
Sto5g1415 | 524 | SUPERFAMILY | Elongation factor TFIIS domain 2 | 165 | 281 | IPR036575 | GO:0006351 | |
Sto5g1415 | 524 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 20 | 97 | IPR035441 | - | |
Sto5g1415 | 524 | Pfam | Transcription factor S-II (TFIIS) | 311 | 345 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
Sto5g1415 | 524 | Pfam | Transcription factor S-II (TFIIS), central domain | 180 | 297 | IPR003618 | GO:0006351 | |
Sto5g1415 | 524 | ProSiteProfiles | TFIIS central domain profile. | 183 | 306 | IPR003618 | GO:0006351 | |
Sto5g1415 | 524 | SMART | mid_6 | 181 | 289 | IPR003618 | GO:0006351 | |
Sto5g1415 | 524 | CDD | Zn-ribbon_TFIIS | 304 | 345 | - | - | |
Sto5g1415 | 524 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | 97 | IPR035441 | - | |
Sto5g1415 | 524 | SUPERFAMILY | Zinc beta-ribbon | 290 | 346 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto5g1415 | Sto-Chr5 | 9689809 | 9696575 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | IWS1 | Sto5g1415 | TFIIS_M | 9.6e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto5g1415 | K03145 | - | gmx:100811982 | 435.647 |