Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1408 ATGATGAATGTTGTAGGACCTGCAAGGTGCTATAGGCAAATCAAAAACAAACCATACCCAAAATCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTCGGGATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGCTGGGAGAAAGAAAATGTTTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAGTATATGGCTAAATTTGCTGGAAAGGATGCATTCCACTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATTAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGAATGAGAGGTGCATTTGGAAAGCCACAGGGAACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGCAAGGATAGCAACAGCCATCACGCACAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGAAAATGGGGCTTCACCAAGTTTAACCGTACTGACTATCTGAAGTACAAATCAGAGAACAGGATTATGCCTGATGGTGTAAATGCTAAGCTTCTTGGATGTCATGGACGTTTGGCCAACCGTCAGCCTGGAAGAGCCTTTCTATCGGAAGCTACTGCTTAG 672 0.4509 MMNVVGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKYKSENRIMPDGVNAKLLGCHGRLANRQPGRAFLSEATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1408 223 PANTHER 60S RIBOSOMAL PROTEIN L10 7 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sto5g1408 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 7 219 - -
Sto5g1408 223 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
Sto5g1408 223 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto5g1408 223 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto5g1408 223 Gene3D Ribosomal protein L10e/L16 5 220 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto5g1408 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 7 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sto5g1408 223 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1408 Sto-Chr5 9645117 9646207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1408 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.111 3.47e-140 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1408 K02866 - pvy:116105818 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1408 5 9645117 9646207 Sto9g2634 9 28629891 28631037 CCT