Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1407 ATGGAAACATCGGGGCCTAATACGGATCAATACGCCATTTcttcatcatcgtcatcatctGCCGGAGGTGTAAATATCACTAACAGTCACAGCAGTGCCGGTATTGAAACGTTGTATGGGATGCGTTTGCCCTCTGTTAGCCCCTTCCGTTCTCCACTCTCTTTTTTACTAGATTACTCGGGTATTCTCCGGTCAAGCTCGTCCACACATGGACATGATTCTGAGGCTGTGATTGGTGGCAACAACGAGATTGCGTCTTCTGAATTACGAGCCCACCTTCAAACTCAATCGCTTGATTCTGCTGCTGGAACGGACTGCAGTGGCAGCAACAATAGCAGCACTGGAGAAGTTGCCATACGTATTATTGGTGCTGGAGAACAGGATCACGATGCGGGGTTAGGTTCTGTTTCTTCGCCGTCCCAAAATCAGCTTGGAGATGGTGATTTGATGAGGAATAGAGGTGGAATGCCCGCATTGGAGGAGGATGCAGAGGGTAGCAGTGGAATTATGACTGGTGAGAGAGTTCCTCTAGTGTCTTCATCATCGTCTTTGGCCGGTAGTGCACAGGTTGATGTGGATGCTGGGAATGGCTTGGAAAGTGACACTAGGGATTCATCGTCTTACCAGAGGTATGATATTCAGCAGGTTGCAAAATGGATTGAGCAGATTCTTCCTTTCTCGTTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATTTGCAAGGTTTCTTTGTGACAATTTGGATTTCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAGGCAGACAGCTCTAAAGGGAGATAGGAAAGTCTCTATTCTTTTCAGTATCTCTATTGCCTTCATGCTTCATGTGATATGCATTTACTGGTGGTATCAAAATGATGAGCTTTTATACCCACTGGTCATGCTTCCTCCAAAAGCAACCCCTCGTTTCTGGCATGcgatttttatcattttggttaATGATACACTGGTGCGGCAGGCAGCAATGTCTTTCAAGTGTTTGCtccttatatattataaaaatggcAGAGGTCATAGCTTCCGTCGGCAGGGTCAAATATTAACTCTGGTTGAGTATACACTACTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTAAACAAGGATTATGGAAGTCTCTTTTCATCACTGACTACAGGATTGTACTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAGTGCTTCTTTTCTGCCTTAAAAGCATTATCAAGAAAGGATGTTCATTATGGGGTTTGTGCTACAATGGAGCAGGTAAATGCCGCAGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATGCTCCTATCCTTTTGCGCTGTAAACACATCTTCTGCGAGGAGTGTGTGTCAGAATGGTTTGAGAGAGAAAGAACTTGTCCACTATGCAGGGCATTGGTGAAACCTGCTGATCTTCGAACCTTTGGAGATGGATCAACAAGTCTGTTTTTCCAGTTATTTTAA 1509 0.4294 METSGPNTDQYAISSSSSSSAGGVNITNSHSSAGIETLYGMRLPSVSPFRSPLSFLLDYSGILRSSSSTHGHDSEAVIGGNNEIASSELRAHLQTQSLDSAAGTDCSGSNNSSTGEVAIRIIGAGEQDHDAGLGSVSSPSQNQLGDGDLMRNRGGMPALEEDAEGSSGIMTGERVPLVSSSSSLAGSAQVDVDAGNGLESDTRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRKVSILFSISIAFMLHVICIYWWYQNDELLYPLVMLPPKATPRFWHAIFIILVNDTLVRQAAMSFKCLLLIYYKNGRGHSFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFSALKALSRKDVHYGVCATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1407 502 MobiDBLite consensus disorder prediction 133 147 - -
Sto5g1407 502 CDD RING-HC_RNFT1_like 440 479 - -
Sto5g1407 502 SMART ring_2 441 478 IPR001841 -
Sto5g1407 502 MobiDBLite consensus disorder prediction 1 25 - -
Sto5g1407 502 ProSitePatterns Zinc finger RING-type signature. 456 465 IPR017907 -
Sto5g1407 502 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 502 - -
Sto5g1407 502 ProSiteProfiles Zinc finger RING-type profile. 441 479 IPR001841 -
Sto5g1407 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 489 IPR013083 -
Sto5g1407 502 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 502 IPR044235 GO:0061630|GO:1904294
Sto5g1407 502 Pfam Zinc finger, C3HC4 type (RING finger) 439 482 - -
Sto5g1407 502 MobiDBLite consensus disorder prediction 128 167 - -
Sto5g1407 502 SUPERFAMILY RING/U-box 433 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1407 Sto-Chr5 9635079 9640806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1407 50 502 C3H Transcription Factor Family AT5G01960 62.031 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1407 - K22379 nnu:104612968 617.076