Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1380 ATGAAGACCATCCTTTCATCGGAAACGATGGACATCCCCGATGGGGTGAGCATCAAGGTGAATGCCAAAATCGTTGTGGTTGAGGGACCTCGTGGCAAGCTCGTACGAGACTTCAAGCATCTCAACCTCGATTTCCAGCTCATCACCGACGACAATGGCAAGAAGAAGCTCAAGATCGAATCCTGGTTTGGATCTCGCAAGACTTCCGCCGCTATTCGCACCGCTCTCAGTCACGTCGAGAATCTCATTACTGGCGTCACCAAGGGTTACCGCTACAAGATGCGCTTCGTCTATGCTCATTTCCCAATCAACGCTAGTATTACCAATGGCAGCAAGGGCATTGAGATCCGCAACTTCCTCGGTGAAAAGAAGGTGCTctcatttttctcttgtttattACTGTATTGTATTACTGGAATTGATTATGTGATGTGTATTTTGATTGACGCATTTCAGGTGAGGAAAGTGGACATGCTTGATGGTGTTTCCGTTATTCGGTCTGAGAAGGTCAAggatgaattgattttggatggAAATGATATTGAGCTTGTTTCTCGGTCCTGTGCCCTCATTAATCAGAAATGCCATGTTAAAAATAAAGATATCCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGGACGATTCAGGAAGAATAG 663 0.4314 MKTILSSETMDIPDGVSIKVNAKIVVVEGPRGKLVRDFKHLNLDFQLITDDNGKKKLKIESWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKGIEIRNFLGEKKVLSFFSCLLLYCITGIDYVMCILIDAFQVRKVDMLDGVSVIRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIQEE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1380 220 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 Gene3D - 90 220 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 220 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 1 220 - -
Sto5g1380 220 SUPERFAMILY Ribosomal protein L6 90 127 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 SUPERFAMILY Ribosomal protein L6 153 214 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 130 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 155 217 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto5g1380 220 ProSitePatterns Ribosomal protein L6 signature 2. 193 214 IPR002359 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1380 Sto-Chr5 9452322 9453182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1380 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 72.851 1.05e-111 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1380 K02940 - gmx:100306058 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1380 5 9452322 9453182 Sto5g1380 5 9452322 9453182 ECH