Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1377 ATGGGTGTGGTCACGTGCTATCCGCCGCCGCGCGCCGATGAGGTGGCCGTGTTGCCTCTCAATTCGCTCCCGCTCGGCTTCAGATTCCGCCCCACCGACGAGGAGCTTATTGATTACTACCTGCGACAGAAGATTAACGGAAATGGTGACGATGTTTGGGTTATTCGAGAAATCGATGTTTGCAAATGGGAGCCCTGGGATTTGCctgAATTGAACATGATGGATTACTTTCTTATTCTTCAATCATTGATAACAAACTTACTACTTAAGAGTATTTCTTCAAGAAGTAATGCTTCCTCTGCTATTTTATTTGCTCATTTGCTTCTTTCTCTGGATTGGATTGATTTACAAATAGATTTATCGGTGATACGGAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACcgcaagtatccaaatggccaTAGATTGAACCGAGCTACGAATCAGGGCTATTGGAAGGCAACGGGTAAGGATCGCAAAATTAAGTCTGGCTCCAACTTAATAGGAATGAAGAAGACTTTAGTCTTCTATAGTGGTCGTGCTCCCAAGGGAAAGAGAACCTATTGGGTTATGCATGAGTACCGTCCTACCCTAAAGGAACTTGATGGTACCAATCCTGGACAGAATGCCTATGTGCTTTGTCGATTGTTTAAGAAACAAGATGAGAGTCTTGAAGGGTCAAACTGTGATGAAGTGACTGAGTCTACTCCTACCAATCCTAATTACTCTCCACAAGAAATACAGTCTGATGCAGGTCTGGCTGCAGTATCCCCTTCACTGGCTACTGAAGATGATAAGCAGCACATAGCTCCATTTTGTACCTCTGAGAACACTGAAGAAGCCACATCTAACATTATAGTGCCGGCCGATTGCCATAGTGATGGGTGTGATGCTTATGGTGCACAAAATCAAACTGTGAAAACAAAAGCTCTGGAGGAGTATCCGCCGCTGGACCTTGACATATTTAATGAACCAATAACTGGGTCATTTGATGACAAACTGTTCTCCCCATTACATGCGCATATGTCATCTGAATTTTATCATCAAGTAAGCGCTCAATCAGGTGGTCACTGTGGGCTGCAACAACAGTATGGTACGAATGAGACCCATATTTCGGAGTTCTTTGACTCAGTTATTGATTGGGGTGAGTTTCCTTGTGAGGATTCCATCAGTCAAAAGCCAATCTCTACAGTTGTGAATCCTAGGGAATATGGATCAGGCAGTGAGTCAGATGTGGAAATGACCAATATACCGCATCAGCAAGCATTGCATGCTGCATATGCCGATGAGGCAATTGCCTGGAGGGCTCCATCTGTGATAAAGACAACTCCAGAATTTGGCAGTACCATCAACCCTGGCCTTAGTGGTTATGAGCAGAAGAGCAATATAGGGCTGTTCCAGGGCGATTATAAGATGGCTTTGCCATCTGATGTTGCTTATGACCAAGTGTACAGTTTATTCAATGATTATCAGGGATCTGGAAACTATAACACACTTGTTAGTGGTGATAATAGTACCGGAATCAGGATTAGATCTCGCCAATTTCGAAATGAACAGCTAAACATCAACCCTGTGGTCCAAGTCCAAGGTACTGCGCCAAGAAGAATACGTCTACAACTACATGAATCTCCGCCTAACTCTAATCAATCGGAGAAAGATGGGAGTTGTGCTCAAGAACACCATGATTCAAGACCAATCATTGAAGGGATCAAAGCCTCAGAAAATAATGTTGCTTATGAGGACACTACTGATGCTAAAGCCAAGAATGAATCCAAGAATCCCAAGTCAACCAACGGTAGTAAGATTTATCAGCAACTTGTTACTGATGCAGACTCCATTTCTGGGTTAGAAGAGACTCTGTTGGGCAAGCCGGTCGGCCACGCAACAAAGGaccttatcagccggctgatgggtatgtatcagccggctgataagaTCCAGGCCGAGCTCCAGCAAGTAGCAACTAGGACTAGGAGTACTCGATTATCAACTTCTAGACCATGCCTTGAGTGTGCTCTGCTGAAGAGCCCTTCCGAAAGAGAAAGACAGAGACCATGGCTTCTTTCCCTTAAGTTTGTTCATGGCATTGAGGTTCAGAGTTGCCTGCTCCTCACTCTGCCCACCAGACAAGAATACCACAGCAGGAACAGCAGCAGCAAGGACACGCTCAGTTACTGCAGCACACTTGTTGATGTCATGAGGTCCATCAACCAGAATCTCAGGCTCAACAATAGGAACCAGTCCATTCTCCTGGCATATGGCGGCATATCGGGCCAACCCATATGCATTTTCATGGATAGCCAGCTCAGATGGCTCAGTAGGGCCAATTTTGAGCACAGCGCGCCATTTGGCAAACCGCGCACCAGCTTCATAGTATTTCTGGCAACGCTGAGCAAGGCCATCAAGACCCTGAGTGGTGGTTTCTCCGTTAGTTCCAGCAAGTTCAACTGTGCCTTTGTCCACCTTGATGCCAGGAAGCACGCCGCCTTCCTTCAACACCTCCACAAAGGGCTTGCCTAA 2529 0.4452 MGVVTCYPPPRADEVAVLPLNSLPLGFRFRPTDEELIDYYLRQKINGNGDDVWVIREIDVCKWEPWDLPELNMMDYFLILQSLITNLLLKSISSRSNASSAILFAHLLLSLDWIDLQIDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNQGYWKATGKDRKIKSGSNLIGMKKTLVFYSGRAPKGKRTYWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKQDESLEGSNCDEVTESTPTNPNYSPQEIQSDAGLAAVSPSLATEDDKQHIAPFCTSENTEEATSNIIVPADCHSDGCDAYGAQNQTVKTKALEEYPPLDLDIFNEPITGSFDDKLFSPLHAHMSSEFYHQVSAQSGGHCGLQQQYGTNETHISEFFDSVIDWGEFPCEDSISQKPISTVVNPREYGSGSESDVEMTNIPHQQALHAAYADEAIAWRAPSVIKTTPEFGSTINPGLSGYEQKSNIGLFQGDYKMALPSDVAYDQVYSLFNDYQGSGNYNTLVSGDNSTGIRIRSRQFRNEQLNINPVVQVQGTAPRRIRLQLHESPPNSNQSEKDGSCAQEHHDSRPIIEGIKASENNVAYEDTTDAKAKNESKNPKSTNGSKIYQQLVTDADSISGLEETLLGKPVGHATKDLISRLMGMYQPADKIQAELQQVATRTRSTRLSTSRPCLECALLKSPSERERQRPWLLSLKFVHGIEVQSCLLLTLPTRQEYHSRNSSSKDTLSYCSTLVDVMRSINQNLRLNNRNQSILLAYGGISGQPICIFMDSQLRWLSRANFEHSAPFGKPRTSFIVFLATLSKAIKTLSGGFSVSSSKFNCAFVHLDARKHAAFLQHLHKGLA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1377 842 Gene3D NAC domain 32 226 IPR036093 GO:0003677|GO:0006355
Sto5g1377 842 SUPERFAMILY NAC domain 122 222 IPR036093 GO:0003677|GO:0006355
Sto5g1377 842 Pfam No apical meristem (NAM) protein 24 198 IPR003441 GO:0003677|GO:0006355
Sto5g1377 842 MobiDBLite consensus disorder prediction 228 249 - -
Sto5g1377 842 MobiDBLite consensus disorder prediction 544 564 - -
Sto5g1377 842 SUPERFAMILY NAC domain 17 75 IPR036093 GO:0003677|GO:0006355
Sto5g1377 842 MobiDBLite consensus disorder prediction 232 249 - -
Sto5g1377 842 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 115 526 - -
Sto5g1377 842 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 19 71 - -
Sto5g1377 842 MobiDBLite consensus disorder prediction 585 604 - -
Sto5g1377 842 ProSiteProfiles NAC domain profile. 23 222 IPR003441 GO:0003677|GO:0006355
Sto5g1377 842 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 115 526 - -
Sto5g1377 842 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 19 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1377 Sto-Chr5 9419653 9429144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1377 17 466 NAC Transcription Factor Family AT3G49530 38.797 1.03e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto5g1377 NAM 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1377 - - gmx:100778903 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2668 9 28826197 28832703 Sto5g1377 5 9419653 9429144 ECH
Sto5g1377 5 9419653 9429144 Sto5g1377 5 9419653 9429144 ECH