Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1355 ATGGCTGCCAGCGAGTTGGCCTGTTCATACGCCACTATGATTCTCCACGACGACGGAATCGCAGTCACTGCTGAGAAGATTAATGCATTGGTTAAAGCGGCGAATGTGGCTGTGGACTCTTACTGGCCTAGCTTGTTTGCGAAACTCGCGGAGAAGAGGAGCATTGATGATCTCATTATGAATTCTGGTTCAGGAGGTGCTGCTGCTGTAGCTGTTGCTGCTCCTGCCGCTGGTGCCCCTGCCGCTGCAGCGCCCGCAGCAGAGGAAAAGAAGGAAGAACCCCAGGAAGAGAGTGATGAAGAAAATATGTTCAGCTTGTTTGACTAG 327 0.5199 MAASELACSYATMILHDDGIAVTAEKINALVKAANVAVDSYWPSLFAKLAEKRSIDDLIMNSGSGGAAAVAVAAPAAGAPAAAAPAAEEKKEEPQEESDEENMFSLFD 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1355 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 108 - -
Sto5g1355 108 CDD Ribosomal_P1 5 64 - -
Sto5g1355 108 Hamap 50S ribosomal protein L12 [rpl12]. 6 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
Sto5g1355 108 Gene3D - 1 63 IPR038716 -
Sto5g1355 108 Pfam 60s Acidic ribosomal protein 22 107 - -
Sto5g1355 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 108 - -
Sto5g1355 108 MobiDBLite consensus disorder prediction 93 108 - -
Sto5g1355 108 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1355 Sto-Chr5 9275939 9277466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1355 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.955 3.27e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1355 K02942 - rcu:8269526 119.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2684 9 28918688 28920314 Sto5g1355 5 9275939 9277466 ECH
Sto1g0745 1 7537539 7539329 Sto5g1355 5 9275939 9277466 ECH
Sto5g1355 5 9275939 9277466 Sto5g1355 5 9275939 9277466 ECH