Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1351 ATGATGCATTCAAACAATGCAAAGCAAGTTGGTGACACGACCTATACAAAGATCTTTGTGGGAGGGTTGGCTTGGGAGACCAAAAGGGACTCTCTCAAACGCTATTTTGAGCAGTTTGGGGACATCTTAGAGGCTGTTGTTATCACTGATAGAAACACTTCCAGATCAAAAGGCTATGGCTTTGTCACTTTTAAGCACCCTGATTCTGCTATAAGAGCTTGTCAGAATCCCTATCCTTTGATTGATGGAAGAAGGGCTAATTGTAATCTTGCTGTTCTTGGTGCACACAAATCCAACCCTTCATCTACCCCATCAgGAAGTGAGAAATTCAGCACAAGTTCATATACTACAGTGGTACCAATCCCATTTCAAGGCACTTCCTCATACTATAATCAGCACATACCCCAATATTACTCACTCCCTTTCCCACCTTATAGGTATCCTACTTATCCTCCCCCACAAGAAATCTATGCAATGAATTACTATAATGTTTATGGGAGTCAGCAGCTGCAGCAACAACAGTTTCCAATTCGTTTTCGTCCAACATTGTACCAACCATATTATGGGGTTAGTCAATATAGCAGAGTGCCACCAGCAGAAGCTTATGTGAAGAAGACACAGTATCCTGAATTGCCACCTCATCAAATGTACACAGTAGTTGGATTACCAGAAGCTGTTATTCCAGTTTCTCCTTCATTACCCACCACTGCAGGAGTAGTCAGTGTGACTGCAGCAACAGTAGAAGCAGCTGGAAACATGAACATAGGATCCTCACCTGAACACAAGTCTTCTTCAGCTTAA 801 0.4232 MMHSNNAKQVGDTTYTKIFVGGLAWETKRDSLKRYFEQFGDILEAVVITDRNTSRSKGYGFVTFKHPDSAIRACQNPYPLIDGRRANCNLAVLGAHKSNPSSTPSGSEKFSTSSYTTVVPIPFQGTSSYYNQHIPQYYSLPFPPYRYPTYPPPQEIYAMNYYNVYGSQQLQQQQFPIRFRPTLYQPYYGVSQYSRVPPAEAYVKKTQYPELPPHQMYTVVGLPEAVIPVSPSLPTTAGVVSVTAATVEAAGNMNIGSSPEHKSSSA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1351 266 SMART rrm1_1 17 89 IPR000504 GO:0003723
Sto5g1351 266 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 246 - -
Sto5g1351 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Sto5g1351 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Sto5g1351 266 PANTHER BOULE-RELATED 1 246 IPR037366 GO:0003729
Sto5g1351 266 SUPERFAMILY RNA-binding domain, RBD 7 92 IPR035979 GO:0003676
Sto5g1351 266 CDD RRM_RBM24_RBM38_like 16 91 - -
Sto5g1351 266 Gene3D - 2 107 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1351 Sto-Chr5 9244940 9246425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1351 12 173 C2H2 Transcription Factor Family AT2G19380 30.055 4.42e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1351 - - adu:107469851 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1351 5 9244940 9246425 Sto5g1351 5 9244940 9246425 ECH