Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1342 atgatgatgaagatgctGCATCATAATCATCACCACCGTCCATTATTATCACCTCCCTTTGATAACGATTCCTGTGGTGATGGCGATGGTCCCACAACTTCTATGCGTAGTAGTATGACTCATCCTCCTCATGCTCCTctacctcctcctcctcatcatcataataatcataatataaACGATGTTGTTAGTGGAGGCTCTGCTTCCCCTGCTCTTGCTGTTGGTGCTGCTGTAACAACTTTGCAGCCTTTTGACATTTCCATTCGCCCCCCCGCCTTCAAATCCCCAGGGGCGATGGCGGCATCGTTGGGGGTTCCTTTCACAAATGCACAATGGAGGGAGCTTGAAAGGCAAGCTATGATATACAAATACATGGTGGCTTCTCTTCCTGTTCCTCCTGCTCTCCTTATCCCCACTTTCACGCCTGCTTCTTCTCGCCCTCCATTGAATAGTGGTTTCAATCTGAGGTTGTCAAGTAGTAGTAATGATCCAGAGCCAGGTAGGTGCAGGAGAACGGATGGGAAGAAATGGAGATGTTCTAGAGATGTGGCTCCTAACCACAAGTACTGTGAGCGTCATATGCACAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCAACCCAACACCAACACTAATACCcccaataatgataataataataatcagcAAATCAAAAGGGCTCGCCAAGATTATCATCATCAGAATAATAGTAATCCCTTTCCTACTTCTGGGGTTACTGTGGCTCCTAATGGCTCTAATCCCACTATCAGAAATGGTGGGTCTTCATCATATCAGTTTCTTCCCTCTACTACTACCACTCAGCTTTACCAAGAATCTTCGTCCCTCAAAACTACTTCTTTTGAACACCTGCCTTCTGTGCCACCGGATAGCGAACCCAGGGGCTTGGAGTGGATGCTGAAGGGAGACCCCATTTCTTCCATGACTGGTTCTGATCCAGAATGGCAGCCTCTGATGCAGAGCAAAGTGGGATCTCCAAATTATGAAGACACTCTGTACCTCAATTCCTATGCGTCTCTCAATTCTGGACTAGACCAACACAACAGACGCTTTCCTCTTTTCCTCAATCCTCTTGTGGAAGACACTCAAAAACCCAGGGGTTTCATTGATGCTTGGTCTAATTCAGGGAACAATAATAGTGCTAATGCCAACAAAGGCTCTGTTTCATCAAATGGTAAATTATCCCTTTCTTCACTTGATCTATCAATGGGAGGTAGTGGTGGTGGTGTGGATGAAGAAATGGGTACTATTCAAATGGGTTTAGGCCTAATGGAGCCTGATGATGGAAGCAAAGACAATGGCACTAAAACCCATCTTGCAAATTGGCTCACCCCTGCATCTTGGCTGACTTCAACTCCTGGGGGTCCCCTGGCTGAGGTTCTAAGGCCAAGCACGGTGGCTGCCGCCATCGATACGGCCTCCGGACCGCCTTCTCCGGTGGTATCTAAAGCGGAAATGGTGTCATCTCCATCTGGGGTCTTGCAGACAACGCTTGCTTCACTGTCTGATAGTAGTAGCAATAGCAGCCCAACAGTGGCATCTTCAAAGGCCAATTCAGAGGTTGCCTTGTTCTGGTTTAATAAAGCAAATTAG 1617 0.4521 MMMKMLHHNHHHRPLLSPPFDNDSCGDGDGPTTSMRSSMTHPPHAPLPPPPHHHNNHNINDVVSGGSASPALAVGAAVTTLQPFDISIRPPAFKSPGAMAASLGVPFTNAQWRELERQAMIYKYMVASLPVPPALLIPTFTPASSRPPLNSGFNLRLSSSSNDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVQPNTNTNTPNNDNNNNQQIKRARQDYHHQNNSNPFPTSGVTVAPNGSNPTIRNGGSSSYQFLPSTTTTQLYQESSSLKTTSFEHLPSVPPDSEPRGLEWMLKGDPISSMTGSDPEWQPLMQSKVGSPNYEDTLYLNSYASLNSGLDQHNRRFPLFLNPLVEDTQKPRGFIDAWSNSGNNNSANANKGSVSSNGKLSLSSLDLSMGGSGGGVDEEMGTIQMGLGLMEPDDGSKDNGTKTHLANWLTPASWLTSTPGGPLAEVLRPSTVAAAIDTASGPPSPVVSKAEMVSSPSGVLQTTLASLSDSSSNSSPTVASSKANSEVALFWFNKAN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1342 538 MobiDBLite consensus disorder prediction 205 227 - -
Sto5g1342 538 PANTHER GROWTH-REGULATING FACTOR 7 62 526 - -
Sto5g1342 538 SMART QLQ_2 105 141 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sto5g1342 538 MobiDBLite consensus disorder prediction 155 178 - -
Sto5g1342 538 MobiDBLite consensus disorder prediction 1 64 - -
Sto5g1342 538 MobiDBLite consensus disorder prediction 190 269 - -
Sto5g1342 538 ProSiteProfiles QLQ domain profile. 106 141 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sto5g1342 538 MobiDBLite consensus disorder prediction 235 269 - -
Sto5g1342 538 PANTHER - 62 526 IPR031137 GO:0005634|GO:0006351|GO:0032502
Sto5g1342 538 ProSiteProfiles WRC domain profile. 163 207 IPR014977 -
Sto5g1342 538 Pfam WRC 164 206 IPR014977 -
Sto5g1342 538 Pfam QLQ 106 138 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1342 Sto-Chr5 9183288 9185475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1342 66 469 GRF Transcription Factor Family AT4G24150 33.410 4.93e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Sto5g1342 WRC 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1342 - - gmx:100796948 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2695 9 28970651 28973165 Sto5g1342 5 9183288 9185475 ECH
Sto5g1342 5 9183288 9185475 Sto5g1342 5 9183288 9185475 ECH