Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1337 atgatgatgaagctaCGTATCAGGGGTATCCATGCATTGAGCTTCGAATGGACGATTAAAGTTCGTGTTCTCCGTATTTGGAAGGCTCCTCCTTATCCGAAGAATTCACCCCATCCGTCTTTGGAGATGGTTCTATGTGATCGTGAGGGGTCGAAGATCTGTGCACACGTGAAGAGTCCATTTGCTGTCAAATTAATGAATGTGCTGAAAGAAGGCTCGGTGTATGTAATGTCGCAATTCAATGTCGGATCTAATTCTGGTGGTTCCCGTGCTGCAAAACATGGCTTTAAGTTGAACTTCCAATTCCAAACACGCATAGCCGAAACTGATGATGACGAGTCAATTGAACGTTATGGCTTTGAGTTTCTAACTGCATCAAGAATTTTTGCGCCAGATTTTGATCATGACATCTTAGTTGATGTAATTGGACGGCTTATCCATATGGGTGATATTCAACAAGCTTCTTCTGATCCTAAGACTAAACGTGTCAACATTCAACTTGAGGATCAAATGAAAGCAAAACTCAACATTACACTTTGGGGTCCTTTCGTTGACCAAATTGTTGAGTATGCTCACAGTCACTCCAATGGTGTTGTAGTCATTGTAATCCAATATTGCAAAATTAAAGAATACGGTGGCCATAAGACACTATCAAACTCAATGTTTGCATCACGAATGTTTGTTAACGCAGACATTCCTGAGATAACTGAGTTTATAAGCGGATTACATCCTGACGAGTTATCAAGCCCTGTTAATCAAAGTCTTCTTAACTCTGCTGTTCCTCCAAGTCCTCTTGAATCTGCATTTTTTGATTGGTCATTGTCAAGTATTCAAGACTTTTATCATGCTGCTGATTCGACTGTATATGTAATTCTTGCATTTGTCCTCAAGGTGAATGTTGAGCGAGGTTGGTACTACGACTCATGCAAAAAATGTAAGTGTAAGCTTGAGCCTGATTTTTACTGCACCAAATGCGATTGTCTGGTTCATGCTTCAACATGCAGGTATAAGGTTGAGCTTCTTATCTTAGATGACTCAGGAACTGCTAATGTTACAGTGTTTGATAAGGATGTTGAGGCTTTTCTGGGCATTTCTGTTATTGACCTTAGGAAGGAACATTTACAGAACGTCAACGATATTCATCAGATGCCGAAAAGGTTTGATAGATTCCTAGGACAAATGTTTGTCCTCAAGGTATCCGTTAAAACATCCAATTGGAACAATTCTTATTCGTTCACTGTACAGAAAATGACTTCCGATCATGATTTGATTGAAAAGTTCAAAAGAATGGCAAAGGCAAAgGATGCCAAGAAGAATGGTGAGGACAGTTTGCAATCGATTGATCTAGCTGCTGTTGATGATGCTCTGTCAACACCTGTGCAGCAGAAGACTACTACTCATAGTGTATTGGATGCGCGCATGCTTTCTTTTGCTGACAATGATACTGGTCCATCTTGCTCTAATAGTCTCAATGCAAAGCGTCCAAATGATGATGGTGTGTCTGCCCAGTTTGGTCCTGATGAGCATAGCACAATTGGAGAAGGCGCTAAAAAGAAGATGAAGGATGCTATTGTCTAA 1578 0.4005 MMMKLRIRGIHALSFEWTIKVRVLRIWKAPPYPKNSPHPSLEMVLCDREGSKICAHVKSPFAVKLMNVLKEGSVYVMSQFNVGSNSGGSRAAKHGFKLNFQFQTRIAETDDDESIERYGFEFLTASRIFAPDFDHDILVDVIGRLIHMGDIQQASSDPKTKRVNIQLEDQMKAKLNITLWGPFVDQIVEYAHSHSNGVVVIVIQYCKIKEYGGHKTLSNSMFASRMFVNADIPEITEFISGLHPDELSSPVNQSLLNSAVPPSPLESAFFDWSLSSIQDFYHAADSTVYVILAFVLKVNVERGWYYDSCKKCKCKLEPDFYCTKCDCLVHASTCRYKVELLILDDSGTANVTVFDKDVEAFLGISVIDLRKEHLQNVNDIHQMPKRFDRFLGQMFVLKVSVKTSNWNNSYSFTVQKMTSDHDLIEKFKRMAKAKDAKKNGEDSLQSIDLAAVDDALSTPVQQKTTTHSVLDARMLSFADNDTGPSCSNSLNAKRPNDDGVSAQFGPDEHSTIGEGAKKKMKDAIV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1337 525 SUPERFAMILY Nucleic acid-binding proteins 10 113 IPR012340 -
Sto5g1337 525 MobiDBLite consensus disorder prediction 511 525 - -
Sto5g1337 525 PANTHER BNAC07G49340D PROTEIN 37 438 - -
Sto5g1337 525 Pfam Replication protein A OB domain 134 228 IPR031657 -
Sto5g1337 525 SUPERFAMILY Nucleic acid-binding proteins 284 419 IPR012340 -
Sto5g1337 525 MobiDBLite consensus disorder prediction 483 525 - -
Sto5g1337 525 Pfam Domain of unknown function DUF223 42 120 IPR003871 -
Sto5g1337 525 PANTHER REPLICATION FACTOR A 1, RFA1 37 438 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto5g1337 525 Pfam Replication factor-A C terminal domain 291 417 IPR013955 -
Sto5g1337 525 CDD RPA1_DBD_B_like 140 240 - -
Sto5g1337 525 Gene3D - 5 112 IPR012340 -
Sto5g1337 525 SUPERFAMILY Nucleic acid-binding proteins 121 243 IPR012340 -
Sto5g1337 525 CDD RPA1_DBD_C 288 432 IPR013955 -
Sto5g1337 525 Gene3D - 113 244 IPR012340 -
Sto5g1337 525 Gene3D - 273 434 IPR012340 -
Sto5g1337 525 CDD RPA1_DBD_A_like 18 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1337 Sto-Chr5 9126702 9129854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1337 1 418 Core DNA Replication Machinery Family AT5G08020 20.729 1.14e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1337 - - soe:110778367 212.616