Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1335 ATGATGGGTgggggtgatgatgatgatattgatGTGTATATTCAAGAAGCATCAGAAGAAAGTCCAAAGAAGAAAAGCAAGAAGAAGAGGTTCAGTGATGAACAAATAAAATCATTGGAGTGCATATTTGAGTCAGACTCAAAGCTTGAGCCAAGGAAGAAGATACAAGTAGCTAGAGATCTTGGGCTTCAGCCTCGCCAAGTAGCCATATGGTTCCAGAACAGAAGAGCAAGATGGAAATCCAAAAGGATAGAGCAAGATTACAGGAAGCTCAGAGATGAGTATGAAAGCTTAGCATCCAGGTTTGAGTCcctaaagaaagagaaggagtcATTGCAAGTAGAGTTGCAGAAGCTGAATGATCTAATGGACACTTCTGATGATGGTAAAAGGGAAGATAGAACAGAATGGAGGGGTGAAGTGAATCCAAGTTTCTCAAAAGAAGGCATGCATTTACAAGATCAAAGTGAAATATTGAGGAAGAAGAGTGGTGGGTGTTGTGAGGACACAGGATCATACCCAATTCTGAAAATGGAAGATCATGAAAAATGGTACAATGGGGATCCAGAACATAAATCTCAATTCTCAGCTCAGATCTTGCACTTTAGGAATCCATGTCAGCACGTTGCAGCCCAAGCAGGATGTAAAAATGGTCATGTGGGATTGGCTCAGAAGAAAGATGATATTTTGAAGGCCTTGAGATGGTATAGTGGAGaatga 720 0.3819 MMGGGDDDDIDVYIQEASEESPKKKSKKKRFSDEQIKSLECIFESDSKLEPRKKIQVARDLGLQPRQVAIWFQNRRARWKSKRIEQDYRKLRDEYESLASRFESLKKEKESLQVELQKLNDLMDTSDDGKREDRTEWRGEVNPSFSKEGMHLQDQSEILRKKSGGCCEDTGSYPILKMEDHEKWYNGDPEHKSQFSAQILHFRNPCQHVAAQAGCKNGHVGLAQKKDDILKALRWYSGE 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1335 239 Pfam Homeobox associated leucine zipper 82 123 IPR003106 GO:0006355|GO:0043565
Sto5g1335 239 CDD homeodomain 30 83 IPR001356 GO:0003677
Sto5g1335 239 Gene3D - 12 87 - -
Sto5g1335 239 Coils Coil 74 125 - -
Sto5g1335 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 162 IPR045224 GO:0003700
Sto5g1335 239 SUPERFAMILY Homeodomain-like 16 82 IPR009057 -
Sto5g1335 239 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Sto5g1335 239 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 19 162 - -
Sto5g1335 239 MobiDBLite consensus disorder prediction 16 31 - -
Sto5g1335 239 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Sto5g1335 239 MobiDBLite consensus disorder prediction 1 31 - -
Sto5g1335 239 PRINTS Lambda-repressor HTH signature 53 62 IPR000047 GO:0003677
Sto5g1335 239 PRINTS Lambda-repressor HTH signature 62 78 IPR000047 GO:0003677
Sto5g1335 239 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Sto5g1335 239 SMART HOX_1 24 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1335 Sto-Chr5 9116284 9117247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1335 30 123 Homeobox Transcription Factor Family AT3G61890 70.213 2.05e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto5g1335 Homeodomain 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1335 K09338 - gmx:100499926 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2704 9 29017053 29017801 Sto5g1335 5 9116284 9117247 ECH
Sto1g0835 1 8811337 8813043 Sto5g1335 5 9116284 9117247 ECH
Sto5g1335 5 9116284 9117247 Sto5g1335 5 9116284 9117247 ECH