Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1320 ATGAAAACTGAGTTCATGTCCTTGTGGGATGGATTTACAACAGACCAAAATGCTCAAGTTATGGTCCTAGCAGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGGGTTCCAGATCGAAGGGAGAGGGTTGAGATATTAAAGGTTATATTGAAGGATGAGAGTGTTGAAGAGAACATTGACTTTGATCATATAGCTGGTCTATGCGAGGGTTATACTGGTTCAGATTTGTTTGAAGTCTGCAAGAAGGCAGCTTATTTTCCTATTAGGGACCTACtagatgaagagaaaaaaggGAAAACGTCTCCTGCACCAAGGCCAGTGTCGCAGTTAGATTTTGAGAAGGTCCTTGCCTCTTCGAAGAAAACGAAGGTTGCTGCAGGTGAATACAGTGGATTAAATCTACAGTCACCAATATGGACAGGGCACAGGGAATCAGATGATTATCAGTTTCAAGCTGCAATCAATGAACTCTCTAAGCTTGTGGTTTCTCAAATTATTAACATCCAATCAGATGCCCAGGATCCATGA 564 0.4096 MKTEFMSLWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGVPDRRERVEILKVILKDESVEENIDFDHIAGLCEGYTGSDLFEVCKKAAYFPIRDLLDEEKKGKTSPAPRPVSQLDFEKVLASSKKTKVAAGEYSGLNLQSPIWTGHRESDDYQFQAAINELSKLVVSQIINIQSDAQDP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1320 187 ProSitePatterns AAA-protein family signature. 20 39 IPR003960 GO:0005524|GO:0016887
Sto5g1320 187 Gene3D - 1 134 IPR027417 -
Sto5g1320 187 Gene3D - 49 131 - -
Sto5g1320 187 PANTHER 26S PROTEASOME REGULATORY PARTICLE CHAIN RPT6-LIKE PROTEIN 1 176 - -
Sto5g1320 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 115 IPR027417 -
Sto5g1320 187 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 176 - -
Sto5g1320 187 Pfam AAA+ lid domain 70 106 IPR041569 -
Sto5g1320 187 Pfam ATPase family associated with various cellular activities (AAA) 4 47 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1320 Sto-Chr5 9018296 9019689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1320 1 114 Calmodulin-binding Proteins AT3G56690 34.188 3.02e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1320 K22530 - vvi:100264007 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2713 9 29068065 29069516 Sto5g1320 5 9018296 9019689 ECH
Sto5g1320 5 9018296 9019689 Sto5g1320 5 9018296 9019689 ECH