Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1312 ATGCAAAATGCCAAGTCACGAAGTGACACAGCAGAAGCTCTACATATGGAGCAGATAGTTAGATTGCTTGAAAAAGCTGATTCCATAACTTCAGCacaagagaaggagaagaagtatTTTGAAAAGCGAGATTCTCTGGGAAGACGGCTATTGGAGCCTCTTCAGTCATTTTATTGCCCTATCTCACTTGATATTATGGAAGATCCAGTGGAAACCTCCTCTGGAAAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTACAGAAGGAAACAATAATTGTCCCTTGACCATGTTGCCTCTGGATACTTTAATATTAAGGCCTAACAAGACTCTTCGACAGTCGATTCAAGAATGGAAAGACAGGAACATCATTATTACCATTTCTACTCTTAAATCCAAACTCCAGACAAATGATGAAGAGGAAGTCCTTAAGTCCTTGGAAAGTTTGCAGGATCTCTGCTTGGGAAGACAGATGCACCGAGAATGGGTAAAAATGGAGAATTACATCACAGTTCTTATTGAGCTCCTAGGTGCTAAAAATAGTGAAATAAGAACGCGTGTTCTGTTCATCCTGTCTTTGCTTGCAAAGGATAATGAAGAGAATAAGGAAGATGTTTCTAAAGTTGATAAGGCACTTGAGTCTATTGTTCACTCACTTGCTCGTCGAATCGAGGAAAGCAAGTTGGCAGTGGAGTTGCTGTTAGAATTATCCAGAAGTAATGTGGTGCGTGATCTCATAGGAAATATTCAAGGAAGCATAATCCTCCTGGTCACAATGTTAAGCAGTGAGGACATTGAAGCAGCCAAAAATGCACATGAACTTCTGGAGAATCTCTCTTTTCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCGGAACCTTTATTCAGGATCAGAAAATGTGAAGATAATCATGACCAAAGCTTTATCAGAAATTTCATTGGCTGACCAGAATAAATTATCATTAGTAAAAGATGGGGCGCTGCAGCCACTTCTTCATTTGCTCTCAAATACTGACCTAGAGATCAAGAAAGTGGCCTTGAAAGCTCTCCTACAGCTCTCAAGCTTGCCAGAGAATGGCCTACAGATGATTAGGGAGGGTGTTGCTCAACCACTTTTTGAACTACTGTATCGTCACAGTTTACAATCCCCGGCTCTGCGTGAACTGGCAGCTGCAACAATTATGCATCTTGCCGTATCAACCACTCACCAACAATCTGATCAAGTTCAGGTTTCGTTGTTGGATTCTGAGGAAGACGTATTTAAATTCTTCTCTCTTATTTCCTTGACGGGACCTTACGTACAAAGCAAGATTCTAGAAACTTTCCAGGCACTGTGCAGATCTCCCTCTGGTTTCACCATCAGAGAAAGGTTGAGACAGCTTTCAGCTGTCCAAGTATTAGTTCAGTTGTTAGAGGTCAATAACCAAACAGTGCGGGCAAATAGCATGAAGCTGTTCTATTTCCTGGCGGAAGACGGTGATTGCAGAAGCTTTTCATCACACGTAACCGAAAGATGTATCAAGGTCTTGCTTACCATCATTGAAACTTCTGATGATGCAGAAGAGATGGTTGCTGCCATGGGTATCATCTCTAGACTTCCAAAAGAGCCACATGTAACCCAGTGGCTTTTAGATTCTGGGACAGTTAACCTTATTCTAGATTGTCTTTTGGATCGACACAAGCACGCCTCACACAAAAAGCAAGTCATAGAGAACTCTGTCCAAGCTCTGTGCCGTTTTACTGTCTCCACAAATCTAGAGTGGCAGAGGGTAGTAGCTCAAGAAGGCATCATCCCAGTGCTGGTGCAATTGCTGGTTTCTGGAACATCCTTGTCCAAGCAAAATGCAGCAATTTCAATCAAGCAGTTCTCAGAAAGCTCACACCAGTTGAGCAAGCCAATAAAGAAGCCAGGTATATTCACATTATGCTTCATACCTCACGAAACCGGTTGCTCAGCACATCTAGGGACCTGTACGGTTGAGTCTTCATTCTGCATCCTGGAGGCTAATGCCTTGGGGCCTCTTGTGAGGATGCTTTCAGAGAATGATATTGGAACGTGTGAGGCTTCCTTAGATGCACTCTTGACATTGCTGAATGGTGAGAAACCACAGAGTGGAAGTAAGATACTTGCAGATGCAAATGCTGTTACTCCAATGATCAGATTATTGAGTGTTGAGGCTGTGAGGTTGCAGGAAAAAACTCTAATAGCTCTGGAGAAAATGTTTCAAGTTGATGAAATAAAGAACAAGTACAGAACTTCAGCCACAATGCCTTTGGTAGACGTAACGCAGAGGAGGGATAGCCGTTTGAGAAGTCTTGCTGCCAAAGTGCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAA 2400 0.4183 MQNAKSRSDTAEALHMEQIVRLLEKADSITSAQEKEKKYFEKRDSLGRRLLEPLQSFYCPISLDIMEDPVETSSGKTFERSAIEKWFTEGNNNCPLTMLPLDTLILRPNKTLRQSIQEWKDRNIIITISTLKSKLQTNDEEEVLKSLESLQDLCLGRQMHREWVKMENYITVLIELLGAKNSEIRTRVLFILSLLAKDNEENKEDVSKVDKALESIVHSLARRIEESKLAVELLLELSRSNVVRDLIGNIQGSIILLVTMLSSEDIEAAKNAHELLENLSFLDQNVIEMAKANYLKPLLRNLYSGSENVKIIMTKALSEISLADQNKLSLVKDGALQPLLHLLSNTDLEIKKVALKALLQLSSLPENGLQMIREGVAQPLFELLYRHSLQSPALRELAAATIMHLAVSTTHQQSDQVQVSLLDSEEDVFKFFSLISLTGPYVQSKILETFQALCRSPSGFTIRERLRQLSAVQVLVQLLEVNNQTVRANSMKLFYFLAEDGDCRSFSSHVTERCIKVLLTIIETSDDAEEMVAAMGIISRLPKEPHVTQWLLDSGTVNLILDCLLDRHKHASHKKQVIENSVQALCRFTVSTNLEWQRVVAQEGIIPVLVQLLVSGTSLSKQNAAISIKQFSESSHQLSKPIKKPGIFTLCFIPHETGCSAHLGTCTVESSFCILEANALGPLVRMLSENDIGTCEASLDALLTLLNGEKPQSGSKILADANAVTPMIRLLSVEAVRLQEKTLIALEKMFQVDEIKNKYRTSATMPLVDVTQRRDSRLRSLAAKVLAQLGVLDKQSSYF 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1312 799 SUPERFAMILY ARM repeat 127 285 IPR016024 -
Sto5g1312 799 SUPERFAMILY RING/U-box 41 123 - -
Sto5g1312 799 SUPERFAMILY ARM repeat 672 791 IPR016024 -
Sto5g1312 799 SUPERFAMILY ARM repeat 295 649 IPR016024 -
Sto5g1312 799 Gene3D - 128 321 IPR011989 -
Sto5g1312 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 127 IPR013083 -
Sto5g1312 799 Gene3D - 429 651 IPR011989 -
Sto5g1312 799 Gene3D - 657 795 IPR011989 -
Sto5g1312 799 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Sto5g1312 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Sto5g1312 799 Gene3D - 322 428 IPR011989 -
Sto5g1312 799 SMART arm_5 593 633 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 157 197 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 323 363 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 364 407 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 711 751 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 282 322 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 199 239 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 544 590 IPR000225 GO:0005515
Sto5g1312 799 SMART arm_5 667 707 IPR000225 GO:0005515
Sto5g1312 799 CDD RING-Ubox_PUB 57 98 IPR045210 -
Sto5g1312 799 Pfam U-box domain 57 122 IPR003613 GO:0004842|GO:0016567
Sto5g1312 799 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 799 - -
Sto5g1312 799 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Sto5g1312 799 Pfam Armadillo/beta-catenin-like repeat 324 363 IPR000225 GO:0005515
Sto5g1312 799 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 1 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1312 Sto-Chr5 8954551 8957951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1312 55 799 U-box Gene Family AT1G76390 28.373 6.10e-65 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1312 - - lja:Lj1g3v1008930.1 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2717 9 29085602 29089408 Sto5g1312 5 8954551 8957951 ECH
Sto5g1312 5 8954551 8957951 Sto5g1312 5 8954551 8957951 ECH