Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1307 ATGGGTAGCTTCATCAGCGACGACGACGAAGAATGTCGATTTTTCGATGCTTCAGAGGATGTTCTGTCCATTGCTGATGCAAAATCCGATGGCGGCACTGACACCACACCCGTAATGGGTTTGGCATGGAATTATTCAGAGTATGAAGTGTGGATTCGGAGCCCAAGGAGTGTGCGTGAGCGTCGGAGCAAGTTCATGAAGTGGATGGAGCTGAGTTCAGATCGAATTGCCCTTGAAAATTCAATAGAGACCAGTGGGGCTGTGAGAAGAATCTCTGCTTTGGAAGATGAGTTTTGTTCGAGTCGCTCTTCAATGTCTTGTTGGTCTACTGAGAATTGTTCAGAGGAGTTCGGTTTAGTGTGGGACAAGAAAATAGGTGATGGTAGTACTAGTACAGACATGGGTTCGGATCATTTGGTTGGTTCAGAGAAGAAGCCTGAGGATTCTGAGAAGGCCTCTGTGGAATCTCCTCCTACTTTCCAACGTTTGATGGGTAAGGAGTTTGAGGATACTAATGTTTTTGCTTGTAAGGTGAAGAGGGCTAGAAGGGGTTGGTTCAGGAGGTTACGTTCAATAACATGCATGATTGATGGGCAAGTTCAAGGGGATAGAGGGAGGAGGCAAGAAGGCACTTGTGGATTATCCGGGTGTAGGATTCAGAGAGTCAAGGTTCGCCAATTCAGGAAGGGAATGAAGGAACTTTCAGCTCTTTTCATGGGGCAAGATTTTCAAGCTCATGAAGGTTCAATTTTGACCATGAAATTTAGTCCTGATGGGCAGTATCTTGCCAGTGCTGGGGAAGATGGGGTTGTAAGATTGTGGAAAGTGGTGGAAGATGAGAGATGTAATGAAATCGACACTCCAGAACTTGATCCATCCTGTGTATACTTTACAGTGAACAATGTCTCTGAACTGACACCCCTTTTTATGGATAAGGAAAAAATGAGTAAAGGGAGGAGCCTGAGAAAAACATCAGATTCTGCTTGCATCATTTTGCCTCCCAAGGTCTTTCGGTTGTTGGAGAGACCATTGCATGAGTTCCATGGACATGAGGGTGAAATTTTGGATCTCTCTTGGTCAAACAATAATTATCTGCTATCATCTTCAGTGGACAAAACTGTTCGCCTATGGAGAGTGGGATATGACCATTGCCTGAAAGTTTTTTCACACAATAACTATGTGACATGCATACAATTCAATCCTGTGGATGATAATCATTTCATTAGTGGATCTATAGATGGAAAAGTGCGGATTTGGGCAATTCCTGATTGTCATGTTGTTGATTGGACTGATGTCAGAGAAATTGTGACTGCTGTGTGTTATCGACCGGATGGACAGGGAGGGATTATTGGCTCCTTAACAGGCAATTGTCGGTTTTACAATGTATCAGAGAATCATTTGCAGTTGGATTCCCAACTATGCTTACTTAATAAGAAGAAACTTCCTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCTCATGATTCTAGCAAAGTCATGGTTACCTGTTCTGATTCACAAGTCAGAATCCTTGATGGGCTTAATGTGGTTGGAAAATACAAAGGTCTCAGTGCAGGGAACCATATGTCTGCATCTTTTACTTCAGATGGGAAACATATTTTATCAGCATGTGAGGATTCCAATGTCTATCTATGGAACGTTAGTCAGGAACGGTCTAATCCCACAAAACCTAAGAAAATTAGGTCATCTGAGCGGTTCTTTTCAAATGCATCTGTTGCAGTACCTTGGTGTGGTTTGAAATCTCAAAATACCGAAAATGAACGCCGACAGAATGTTTCTTATCAGAGATCATCTCAACTCGTACATCTCGGTCCACCTGCTTCGTTTTCTCTGGGCCAAGAGTTTTTCTCGGAGTCACCTAAGGGATCTGCAACTTGGCCTGAGGAGAAGCTTCATTCTTCAAGCCCCAAGGCTGGAAAATCATCAATGCATAAATCTGCTTACAAGTTCTTGAAAGCTTCTTGCAAGAGTACCTCCAGTACTCATGCTTGGGGTCTGGTCATTGTGACTGCAGGCTGGGATGGGCGGATAAAATCATTCTACAATTATGGGTTACCTGtaaccgtttga 2091 0.4323 MGSFISDDDEECRFFDASEDVLSIADAKSDGGTDTTPVMGLAWNYSEYEVWIRSPRSVRERRSKFMKWMELSSDRIALENSIETSGAVRRISALEDEFCSSRSSMSCWSTENCSEEFGLVWDKKIGDGSTSTDMGSDHLVGSEKKPEDSEKASVESPPTFQRLMGKEFEDTNVFACKVKRARRGWFRRLRSITCMIDGQVQGDRGRRQEGTCGLSGCRIQRVKVRQFRKGMKELSALFMGQDFQAHEGSILTMKFSPDGQYLASAGEDGVVRLWKVVEDERCNEIDTPELDPSCVYFTVNNVSELTPLFMDKEKMSKGRSLRKTSDSACIILPPKVFRLLERPLHEFHGHEGEILDLSWSNNNYLLSSSVDKTVRLWRVGYDHCLKVFSHNNYVTCIQFNPVDDNHFISGSIDGKVRIWAIPDCHVVDWTDVREIVTAVCYRPDGQGGIIGSLTGNCRFYNVSENHLQLDSQLCLLNKKKLPGRGITGFQFLPHDSSKVMVTCSDSQVRILDGLNVVGKYKGLSAGNHMSASFTSDGKHILSACEDSNVYLWNVSQERSNPTKPKKIRSSERFFSNASVAVPWCGLKSQNTENERRQNVSYQRSSQLVHLGPPASFSLGQEFFSESPKGSATWPEEKLHSSSPKAGKSSMHKSAYKFLKASCKSTSSTHAWGLVIVTAGWDGRIKSFYNYGLPVTV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1307 696 MobiDBLite consensus disorder prediction 627 648 - -
Sto5g1307 696 Gene3D - 208 482 IPR015943 GO:0005515
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 284 IPR001680 GO:0005515
Sto5g1307 696 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 2 695 - -
Sto5g1307 696 Gene3D - 483 598 IPR015943 GO:0005515
Sto5g1307 696 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Sto5g1307 696 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Sto5g1307 696 PRINTS G protein beta WD-40 repeat signature 407 421 IPR020472 -
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 379 - -
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 562 IPR001680 GO:0005515
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 419 IPR001680 GO:0005515
Sto5g1307 696 SMART WD40_4 236 275 IPR001680 GO:0005515
Sto5g1307 696 SMART WD40_4 472 512 IPR001680 GO:0005515
Sto5g1307 696 SMART WD40_4 381 420 IPR001680 GO:0005515
Sto5g1307 696 SMART WD40_4 422 461 IPR001680 GO:0005515
Sto5g1307 696 SMART WD40_4 340 378 IPR001680 GO:0005515
Sto5g1307 696 SMART WD40_4 513 553 IPR001680 GO:0005515
Sto5g1307 696 SUPERFAMILY WD40 repeat-like 241 685 IPR036322 GO:0005515
Sto5g1307 696 PANTHER WD REPEAT DOMAIN 44 2 695 IPR040324 -
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 379 IPR001680 GO:0005515
Sto5g1307 696 MobiDBLite consensus disorder prediction 128 157 - -
Sto5g1307 696 Pfam WD domain, G-beta repeat 243 275 IPR001680 GO:0005515
Sto5g1307 696 Pfam WD domain, G-beta repeat 384 419 IPR001680 GO:0005515
Sto5g1307 696 Pfam WD domain, G-beta repeat 342 377 IPR001680 GO:0005515
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 419 - -
Sto5g1307 696 MobiDBLite consensus disorder prediction 138 152 - -
Sto5g1307 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1307 Sto-Chr5 8896364 8899599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1307 - - gmx:100817209 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2728 9 29145159 29148651 Sto5g1307 5 8896364 8899599 ECH
Sto5g1307 5 8896364 8899599 Sto5g1307 5 8896364 8899599 ECH