Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1279 ATGGACTTGGATAGCATTGAGTGTGTTTCATCCTCGGATGGCATGGATGAGGACGAGATCCAACACCATAGTCTGCATCCTCACCCCCATCTTCACTCTGAGTTTTCTTCCACAAAACCTCGCAATGGAGGCACCAATAACAACAATATTATGGGTCCTACGGCTATTGCTCCCGCAACCAGTGTCCATGAGTTGCTGGAATGCCCTGTTTGTACCAATTCAATGTACCCACCAATTCATCAGGAGGGTGTTAGGTTGACTGCAAATGACTTAAGAAGTGATGCTTGTAGAATTTGTCACAATGGGCACACATTGTGTTCCACATGCAAAACAAGAGTTCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAGGTGGCGGAATCACTTGAGTTACCATGCAAGTACTATTCGCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGGCAGTCTGCAATTTCAGACCATACAATTGTCCATATGCTGGCTCAGAATGTTCTGTTGGTGGGGATATTCCTTTCCTTGTTGCTCATTTGAGGGATGATCATAAGGTAGACATGCACACAGGTTGTACGTTCAACCATCGATATGTCAAGTCTAATCCCCGCGAAGTAGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGGATGGCTCCTGTTTACATGGCATTCCTTCGTTTCATGGGCGATGAGAATGAAGCtcgaaactatagctatagccTAGAGGTAGGAGGAAATGGGAGGAAACTTATATGGGAGGGAACTCCGCGAAGTATCCGCGATAGCCACCGCAAAGTTAGGGACAGCCATGATGGCCTCATTATCCAACGAAATATGGCCCTTTTTTTCTCAGGAGGGGATAGGAAGGAGCTGAAGCTCAGAGTTACAGGACGAATATGGAAGGAGCAACAGAATCCAGATGGTGGGGTGTGCATACCTAATCTTTGTAGCTAA 1044 0.4511 MDLDSIECVSSSDGMDEDEIQHHSLHPHPHLHSEFSSTKPRNGGTNNNNIMGPTAIAPATSVHELLECPVCTNSMYPPIHQEGVRLTANDLRSDACRICHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVGGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1279 347 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 339 - -
Sto5g1279 347 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 191 326 IPR008974 GO:0005515
Sto5g1279 347 ProSiteProfiles Zinc finger SIAH-type profile. 138 198 IPR013010 GO:0008270
Sto5g1279 347 MobiDBLite consensus disorder prediction 15 35 - -
Sto5g1279 347 SUPERFAMILY TRAF domain-like 138 330 - -
Sto5g1279 347 SUPERFAMILY RING/U-box 67 126 - -
Sto5g1279 347 CDD Sina 199 327 - -
Sto5g1279 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 1 339 - -
Sto5g1279 347 CDD RING-HC_SIAHs 66 121 - -
Sto5g1279 347 ProSiteProfiles Zinc finger RING-type profile. 68 121 IPR001841 -
Sto5g1279 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 190 IPR013083 -
Sto5g1279 347 MobiDBLite consensus disorder prediction 36 54 - -
Sto5g1279 347 MobiDBLite consensus disorder prediction 1 54 - -
Sto5g1279 347 Pfam Seven in absentia protein family 127 326 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1279 Sto-Chr5 8701503 8704840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1279 59 333 C3H Transcription Factor Family AT2G41980 76.000 3.05e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1279 K04506 - zju:107414770 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2744 9 29261354 29264016 Sto5g1279 5 8701503 8704840 ECH
Sto5g1279 5 8701503 8704840 Sto5g1279 5 8701503 8704840 ECH