Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1260 ATGATGCGGATAGGGAAAGCCTTAAGCTGGAGCTCCTTGTGTATGAGTTTGATGCTTCTAATAATGGAAGAAGTGAGTGGTGGAGGAATAGGATGTGCATCTGGTTGCGGCAATTTCACAAACATTAAGCATCCATTCCGACTAGGGAACGATCCCCCAAACTGTGGGAAACCAAAATACGAGTTAGCGTGTGAGAATAACGTAACGCTGCTTTATCTGTTCTCCGGAAAATACAGAGTGTTAGGAATCAACTACCACAACTATACAATCCGAATCGTTGATGCCGGGGTTCAACAACCTAATTGCTCCTCCCTCCCTCGCTATTTCTTAACCAGACTTAATTTCTCTGGTAGTTATTATTACATCGACAATTCCGAGTCTCAAAACCCGGATCCATACCGTGCCGATGTAGACAGCTCAATCGAGTTCCAGTACATATCATACTTCAAGTGTAGAAATGGGGTAGTGAGGAATGGGTACGTGGATACTGCTCCCTGCCTGAATTTGCACTCAGAAGGCCATATGTATGCTTTGATTGGAGACTTAATGGTTGGGAACCTAACAGATGAGTGTGAGCTGAAATTGATGGCAATGATATCAGTATCATCGTCATGGAACCAAAACTTGTCGTATGGTGAGATTCACAGTGTGTTATCCCGTGGATTTGAGCTTTCTTGGTGGCCTGCAGCTTGTAATTGTTCAAGTCACACATACAAATACTACTACTGCTATTTCAACTCTACCACTGCAGCATGCGAAATAACTCACGATTACTGTTTTACTCCCTTGAGATTCGCCAAGCACTATTGCGGTAACGTAACCAAGCTGCGCGCATTTGCAGAAGGCGTAGGAATTTCTCGTATAAGAGACATTGCAGCATTTGCCGGAAACGACTACAATATTAGTCTATCACAGCTTGGGATCAACACAGGAGTAATCACAGGAAGATACCTCCTCCCACTAATTTCAGCTAGATTTCTATTGGGTCTCATATTTTTGTTAGTACTGTTGATTTATACATGTCGAACAAGACACTTATCAATGTATGCCGATATTGAAGATTTTCTGCAACTTCATGACCTCTTGCCAGTAAGATACTCCTACAAGGATTTGAAGATGATGACCAATGGCTTCAAGACCAAGATAGGACAAGGAGGATTCGGGACTGTTTACCAAGGGAAGCTACGTAGTGGGCCTCTTGTAGCTATCAAAATGTTGGGTAAATCTAAAGATAATGGCAAGGATTTTATCAGTGAAGTGGCTACTATCGGAAGAATACATCATTTCAATGTGGTTCATCTTATTGGATTTTGCGTGGAGGGATCAACGCGTGCTCTTGTTTACGAATTTATGTCTAATGGTTCTcttgataaatatattttctccAGAGAAGGAGATGTCCCCTTAAATTATGGTAAAATATACGAGATATCTCTTAGAGTGGCTCGTGGAATTGCTTATCTTCATCATGGTTGTGATATGCAGATTTTACATTTTGATATCAAACCCCATAACATTCTTCTTGATGACAACTTCACTCCAAAGATTTCAGACTTCGGACTTGCAAAGCTATACCCTGTTGATGATAGCGTTGTCACTCTAACTGCAGCAAGAGGAACACTTGGGTACATGGCTCCAGAATTGTTCTACCAAAACATAGGAGGGGTGTCTTACAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAGATGGCAAGTAGGAGAAAGAATTTTGATCCTCTTGCAGAGCATtcaagtcaattttattttcctttttggaTATATGATCAATTCATTGAAGAGAATGACATAAACATAGAAGATCTTACCCAAGAGGAAAATAATTTAGCAAAGAAGATGTTCATAGTAGCACTATGGTGTATACAGTTGAAGCCTAGTGATCGTCCTTCAATGAATAAAGTAGTAGAAATGTTAGAGGGAGAAGTTGAAAGCCTTGAGATGCCTCCGAAGCCTTCTTGGGGTGCTCATGAAGCAGTTGAAGACCAAGCAGCTTCCGCTGAGTCCATACATAGTTCTAGTAATCCAGGAGAAATTTCCAGTGATGATGAATAA 2076 0.4027 MMRIGKALSWSSLCMSLMLLIMEEVSGGGIGCASGCGNFTNIKHPFRLGNDPPNCGKPKYELACENNVTLLYLFSGKYRVLGINYHNYTIRIVDAGVQQPNCSSLPRYFLTRLNFSGSYYYIDNSESQNPDPYRADVDSSIEFQYISYFKCRNGVVRNGYVDTAPCLNLHSEGHMYALIGDLMVGNLTDECELKLMAMISVSSSWNQNLSYGEIHSVLSRGFELSWWPAACNCSSHTYKYYYCYFNSTTAACEITHDYCFTPLRFAKHYCGNVTKLRAFAEGVGISRIRDIAAFAGNDYNISLSQLGINTGVITGRYLLPLISARFLLGLIFLLVLLIYTCRTRHLSMYADIEDFLQLHDLLPVRYSYKDLKMMTNGFKTKIGQGGFGTVYQGKLRSGPLVAIKMLGKSKDNGKDFISEVATIGRIHHFNVVHLIGFCVEGSTRALVYEFMSNGSLDKYIFSREGDVPLNYGKIYEISLRVARGIAYLHHGCDMQILHFDIKPHNILLDDNFTPKISDFGLAKLYPVDDSVVTLTAARGTLGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASRRKNFDPLAEHSSQFYFPFWIYDQFIEENDINIEDLTQEENNLAKKMFIVALWCIQLKPSDRPSMNKVVEMLEGEVESLEMPPKPSWGAHEAVEDQAASAESIHSSSNPGEISSDDE 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1260 691 Gene3D Phosphorylase Kinase; domain 1 353 450 - -
Sto5g1260 691 Gene3D Transferase(Phosphotransferase) domain 1 451 656 - -
Sto5g1260 691 ProSiteProfiles Protein kinase domain profile. 376 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1260 691 Pfam Protein kinase domain 379 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1260 691 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Sto5g1260 691 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 673 IPR045874 GO:0004672
Sto5g1260 691 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Sto5g1260 691 SUPERFAMILY Protein kinase-like (PK-like) 361 647 IPR011009 -
Sto5g1260 691 SMART serkin_6 376 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1260 691 Coils Coil 600 620 - -
Sto5g1260 691 MobiDBLite consensus disorder prediction 654 691 - -
Sto5g1260 691 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 32 673 - -
Sto5g1260 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1260 Sto-Chr5 8536159 8541789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1260 36 660 Receptor kinase-like Gene Family AT5G38260 35.101 6.91e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sto5g1260 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1260 - - gmx:106794110 708.368