Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1259 ATGGGTACGGGTCAGAAAGAGTGTAAGGAATTGAGGTGCGGCCACCATGGTCCGCCTATCCGCTTTCCCTTCCGACTCATAGACCGCCAACCTCACCACTGTGCCTATCCTATTCCTTCCTTCCATCTCACTTGTACCCCTAATCATCAAACCCACCTTCACATCCCTACACCTTCCGCCCTTGTTCAACTCTCCGTCAAATCCATAGATTACCAATCCCAGAAAATTCAGTTATTTGACCCTTCTCCCCAACCTTGCCTTCCTTCCCTCTTTCTCAAACTCCACCAccacccctctctctcttcaatCTTCCCCTTCGTATCTGATTCTCCACAGTTTATACACAACATCACTTTCCTCAATTGCCCTTCATCACTAGGTCCTCCATATCGATATCCAGCGAGCTCCAGCCGTACTATTTTGGGTTTCCTTGAGGATGATATTAATTTTGGTACTCAATTGGAGCCGCCACAAGATATGCTGTCTTGCCCCATTTATGCATTTGATGACCACCATGACTCTGAAATGATCCTTGAATCCGACCTTCTGTCCTGTACCAAGATGTTTGAGATTTCATCAAATCTCACTTTTGCTGGAGAGCTTCAGCGAAATTATATGGATTTGGTTTGGTTGGATCCAGATTGTAGTAGGTGTGAAGCCAATGGAATGAGAATGAAAGGGGAAGATGAAGCCAGAGTTGAAATTTTTCTACAGGATTATAGGGCGCTTAAGCCTACTAGATTCTCTTACGCTGATGTTAAGCGAATTACTAACTATTTCAAGCATAAATTAGGAGAAGGAGCCCATGGAGTAGTTTTCAAAGGTAAACTTTCCAATGAAATTCTTGTGGCTGTAAAGATCCTCAATAACTCAGAAGGGGATGGAAAAGAGTTCATTAATGAAGTTGGAATCATGGGTAAAATTCATCACGTCAATGTTGTTCGCTTGTTGGGCTTTTGTGCTGATGGATTTCATCGAGCTCTTGTCTACGATTTCTTCCCAAAAGGTTCATTGCAAAACTTCATAACACCACCAGAAAACAAGTACTTGTTCTTAGGAAGAAAAAACACCAGCACAAATTCAAAAGATTTCCAAATTCTTTACCCTGAATGGGTCCATAATTTGGTTGAAGGAGGAGGAGACACACACATCAAtattgaagatgaagaagatattAAAATTGCAAGGAAATTAGCAATTGTGGGACTTTGGTGCATTCAATGGCATCCAGTGAACCGTCCATCCATGAAAAATGTGGTACAAATGTTGGAAGGAGATGAAGATAAATTAAAGGTGCCCCCAATTCTTTTTGACTCCACCACTAGTGGTAGTACAAGTGCAATTGTTCCGCCAAAACGTCTAAACTTGGAGTTGGAAACAATTCATGAATTGGAATGA 1398 0.4077 MGTGQKECKELRCGHHGPPIRFPFRLIDRQPHHCAYPIPSFHLTCTPNHQTHLHIPTPSALVQLSVKSIDYQSQKIQLFDPSPQPCLPSLFLKLHHHPSLSSIFPFVSDSPQFIHNITFLNCPSSLGPPYRYPASSSRTILGFLEDDINFGTQLEPPQDMLSCPIYAFDDHHDSEMILESDLLSCTKMFEISSNLTFAGELQRNYMDLVWLDPDCSRCEANGMRMKGEDEARVEIFLQDYRALKPTRFSYADVKRITNYFKHKLGEGAHGVVFKGKLSNEILVAVKILNNSEGDGKEFINEVGIMGKIHHVNVVRLLGFCADGFHRALVYDFFPKGSLQNFITPPENKYLFLGRKNTSTNSKDFQILYPEWVHNLVEGGGDTHINIEDEEDIKIARKLAIVGLWCIQWHPVNRPSMKNVVQMLEGDEDKLKVPPILFDSTTSGSTSAIVPPKRLNLELETIHELE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1259 465 SUPERFAMILY Protein kinase-like (PK-like) 240 344 IPR011009 -
Sto5g1259 465 PANTHER RECEPTOR-LIKE KINASE 4 224 - -
Sto5g1259 465 PANTHER RECEPTOR-LIKE KINASE 224 353 - -
Sto5g1259 465 PANTHER RECEPTOR-LIKE KINASE 352 463 - -
Sto5g1259 465 ProSiteProfiles Protein kinase domain profile. 258 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1259 465 Gene3D Phosphorylase Kinase; domain 1 234 332 - -
Sto5g1259 465 Pfam Protein tyrosine and serine/threonine kinase 260 345 IPR001245 GO:0004672|GO:0006468
Sto5g1259 465 Pfam Wall-associated receptor kinase galacturonan-binding 8 80 IPR025287 GO:0030247
Sto5g1259 465 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 224 IPR045874 GO:0004672
Sto5g1259 465 PANTHER RUST RESISTANCE KINASE LR10-RELATED 352 463 IPR045874 GO:0004672
Sto5g1259 465 PANTHER RUST RESISTANCE KINASE LR10-RELATED 224 353 IPR045874 GO:0004672
Sto5g1259 465 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1259 Sto-Chr5 8528825 8530779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1259 366 434 Receptor kinase-like Gene Family AT1G66910 45.833 4.41e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sto5g1259 PK_Tyr_Ser-Thr 3.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1259 - - aip:107619931 316.235