LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g1251	ATGCATGATACCTTGTGTATGGTGGGAGGGAGAAGGAAAGCCTTAAACTGGAGCTGCTGGTGTTTGAGTTTGATGCTCTTCACTCTGCTTGCAGTGCACGAAGTGAGTGGTGAAGCAAatgagaaagaagaggaaggtTGTGCTTCTCGTTGCGGCAATTTCACAAACATCAAGCATCCATTCCGACTACGCCATGATCCCCCAAAGTGTGGGAAACCCAAATACGAGTTAGCGTGCGAGAATAACGTAACGCTGCTTTATCTGTATTCGGGAAAATACAGAGTGTTGGGAATCAACTACCACAATTACACAATCCGAATCGTTGATCCCGGGATTCAACAAGCTAATTGCTCCTCCCTCCCTCGCCATTTCTTGTATCAACATAACTTGTCTGATAGTTATTATTACAGCAATACTTTTAATGATTCTGAATACCAGGATCCATACCGCGTGGGTGTATACGACAATAATATTATGTGGGAGCACATCATATACTTGAAGTGTAGGAAGGCAGTAGTGAGAAACGATAGTGGGTACGTGGATACTGGTCCCTGCCTGAATTCGGCTTCCGAAGGCCATATGTATGCTTTGATCGGAGACTTAATGGTTGGAAACCTAAGAGATGAGTGTGAGGTGAAATTGATGACAATGGTATCATGGAATCTAGGCAACAAGAACCTGTCGTATGGTGAGATTCACAGAGTGTTGTCGTTTGGATTTGAGATTTCCTGGTGGCCTGCAGCTTGTAATTGTTCAAATGACGACCTATTCTGCTATTTCAACTCTACCATCCAAGATGCCGCATGCCTCCCGGACGGATGTTTTACTCCCATGGGACCCCAGCTGCAGAATTGTGATATTGAAGATTTTTTGCAACTTCATGACCTCATGCCTGTAAGATACTCCTATAAGGACTTGAAGATGATGACCAAAGGCTTCAAGACCAATATAGGACAAGGAGGATTCGGCACTGTTTATCAAGGGAAGTTACGAAGTGGTCCTCTTGTAGCTGTCAAAATGTTGGGTAAATCCAAACATAACGGCCAGGAATTTATAAGTGAAGTGGCAACTATCGGAAGAATACACCATTTCAATGTGGTTCATCTTATTGGATTTTGTGTGGAGGGATCAAAACGTGCTCTCGTCTATGAATTTATGCGCAATGGTTCTcttgataaatatattttctccAAAGAAGGAAATACCCccttaaattatgataaaatatatGAGATATCTCTTGGAGTAGCTCGTGGAATTGCATATCTCCATCATGGCTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCATAACATTCTTCTTGATGACAATTTCACCCCAAAGATATCAGATTTCGGACTTGCAAAACTATACCCTGTGGATGATAGTATTGTTACTCTAACAGCAGCAAGAGGAACAATAGGGTACATGGCTCCTGAATTGTTCTACCAAAATATAGGGGGAGTGTCTTACAAAGCTGATGTCTACAGTTTTGGAATGCTTTTGATGGAGATGGCAAGCCAGAGAAAGAACTTAAATCCTCATGCAGAGCATTCAAGTCaactttattttcctttatgGATACATGACCAATTCACTGAAGAGAAAGACATAGAAATGGAAGATTTGACACAAGAGGAAAAGAATTTAGCAAAGAAAATGTTCATAGTAGCTCTCTGGTGTATACAATTGAAGCCTAGTGATCGTCCTTCAATGAAGAAAGTAGTAGAAATGTTAGAAGGAGAAGTTGAAAGCCTTGAAATACCTCCTAAGCCTTCTTTTTATCCTCATGAAGCAGTTGTGCAGGATGACAGATCCAACTATGACCAAACATCATCCATTGATTCCATGCATACTTCTAGTAATTCAGGGGAGATTGTCAGAGATGAGGAGTAA	1902	0.3996	MHDTLCMVGGRRKALNWSCWCLSLMLFTLLAVHEVSGEANEKEEEGCASRCGNFTNIKHPFRLRHDPPKCGKPKYELACENNVTLLYLYSGKYRVLGINYHNYTIRIVDPGIQQANCSSLPRHFLYQHNLSDSYYYSNTFNDSEYQDPYRVGVYDNNIMWEHIIYLKCRKAVVRNDSGYVDTGPCLNSASEGHMYALIGDLMVGNLRDECEVKLMTMVSWNLGNKNLSYGEIHRVLSFGFEISWWPAACNCSNDDLFCYFNSTIQDAACLPDGCFTPMGPQLQNCDIEDFLQLHDLMPVRYSYKDLKMMTKGFKTNIGQGGFGTVYQGKLRSGPLVAVKMLGKSKHNGQEFISEVATIGRIHHFNVVHLIGFCVEGSKRALVYEFMRNGSLDKYIFSKEGNTPLNYDKIYEISLGVARGIAYLHHGCDMQILHFDIKPHNILLDDNFTPKISDFGLAKLYPVDDSIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASQRKNLNPHAEHSSQLYFPLWIHDQFTEEKDIEMEDLTQEEKNLAKKMFIVALWCIQLKPSDRPSMKKVVEMLEGEVESLEIPPKPSFYPHEAVVQDDRSNYDQTSSIDSMHTSSNSGEIVRDEE	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g1251	633	CDD	STKc_IRAK	317	583	-	-
	Sto5g1251	633	Pfam	Wall-associated receptor kinase galacturonan-binding	47	109	IPR025287	GO:0030247
	Sto5g1251	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Sto5g1251	633	MobiDBLite	consensus disorder prediction	607	625	-	-
	Sto5g1251	633	Pfam	Protein kinase domain	314	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g1251	633	Gene3D	Phosphorylase Kinase; domain 1	286	385	-	-
	Sto5g1251	633	Gene3D	Transferase(Phosphotransferase) domain 1	386	596	-	-
	Sto5g1251	633	ProSitePatterns	Protein kinases ATP-binding region signature.	317	339	IPR017441	GO:0005524
	Sto5g1251	633	SMART	serkin_6	311	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g1251	633	SUPERFAMILY	Protein kinase-like (PK-like)	296	582	IPR011009	-
	Sto5g1251	633	Coils	Coil	629	633	-	-
	Sto5g1251	633	Coils	Coil	535	555	-	-
	Sto5g1251	633	MobiDBLite	consensus disorder prediction	607	633	-	-
	Sto5g1251	633	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	26	289	IPR045874	GO:0004672
	Sto5g1251	633	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	286	611	IPR045874	GO:0004672
	Sto5g1251	633	ProSiteProfiles	Protein kinase domain profile.	311	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g1251	633	PANTHER	STRESS-INDUCED RECEPTOR-LIKE KINASE	26	289	-	-
	Sto5g1251	633	PANTHER	STRESS-INDUCED RECEPTOR-LIKE KINASE	286	611	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g1251	Sto-Chr5	8485086	8489333	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g1251	50	616	Receptor kinase-like Gene Family	AT5G38260	36.893	4.61e-109	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Sto5g1251		Pkinase	6.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g1251	-		-	gmx:100782716	683.715