Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1234 ATGGATATCCAtactttcttccttcttctctccTTACTTTCTATGCTAACTCCATCATCATCTCTTACACTAGTACCACACCATCTCTGCGAACAATCCCTTGAGAAACAAAGATGTGTGTCCCATGTTTCTGAATTGTTGACATCAAACGACGACGTTCAAAACCTCACTGTGTTGCATTCCTTCTTAATGGAATCCACCTCCCACATTCATAAAGCCATGTACAAATCAAATTCTATCAAGCAGTGGTCCAAGAATATGAATATTCTTAAAAATACTACTCCAACTTCAAGGGATCAAGTAGCTTTCTTTGACTGTGAGAAGCTTCTCGAACTTTCCATGCACAGACTTGGAGACTCAATGATGGCTTTGAGGAGTAATAGTAATAGTACGAGGATCCCATTAGAATCCCAGCATGATGCTCACACGTGGCTTAGCAGTGTCCTTTCCTACCATGTCACGTGCTTGGAAGGGCTGGAGGGGTTAACAACACGTGCTTTCATTGAGGCTGACCTGGAGAACTTAATATCGAGAGCAAAAACCTCATTAGACATGTTTGTTGCTATTTTCCCTCCAAAGGAAAAGGATTATGAAGAAGCATTAGTTATAGATGAGTTTCCATCTTGGGTGGCAAGTGAGGATAGGAAGCTTCTAGAGTCTTCTTCTTCGGTTAAGGATGTTATAAAACCCAATGTTGTGGTGGCTAAGGATGGGAGTGGAAACTTCAAGACAGCGAGTGAGGCTGTGGTTTCTGCACCTAATAACGCTCAAAGGAGGTTCATTATTTTAGTTAAGAAAGGGACGTACGTTGAACAAGTTAACATCGGAAAAACAAAATCCAATTTGATGCTTGTCGGAGAAGGAATGGATACTACAATTATCGCTGGTAGCTTGAATAATAAAGATGGACAACCCATATCCATCTCTGGCACTATTTCTTCTGATGATCCTGGATTAATACTGAAAGACCTATGTATCCAAAACACAGCAGGAGCACAAAAGGATCAAGCGGTGGCTCTACGGGCGAATGAGGACCGGACGGTGGTGTACCGGTGCCGCATCGAAGGCTTCCAAGACACACTGTACGCTCAAGCACAAAGACAGTTCTACCGCGAGTGCATCATTGCAGGTACGGTGGACTTCATCTTCGGCGACGCATCCACCGTGATCCAGAACTCTAAAATCATAGCCCGAAGGCCCATCAATGGGCAGTCCAACATAGTCACGGCCCAAAAACGGAGCTATCCTAAGGAAAACACAGGCACTTCGATTCAGCATTGTGATATAATACCAAGCCCAGAACTTGGGCCTGTGATTGGGCGCATCAAAACGTATCTGGGGCGTCCGTGGGGGAGTTTCTCACGAACGGTGGTGATGGAGTCGTTCATTGATAAACATGTGGATCCAGCTGGATGGCAAGTTTGGTCGAGTGATGAAGATCCTATGGTGAAGACAAAAACATTGTATTACGGTGAGTATGAGAATAAGGGACCTGGCGCTGACGTCAGCAGGAGAGTGAAGTGGAGTGGTTTCCATGTGATTACTAACCGGGCTGATGCTTTCAACTTCACTGTGGGACGGCTTATAAATGGTCGAGCATGGCTCCCTAGTACTGGGGTTCCCTTCGATGTGGGGCTTTAG 1641 0.4449 MDIHTFFLLLSLLSMLTPSSSLTLVPHHLCEQSLEKQRCVSHVSELLTSNDDVQNLTVLHSFLMESTSHIHKAMYKSNSIKQWSKNMNILKNTTPTSRDQVAFFDCEKLLELSMHRLGDSMMALRSNSNSTRIPLESQHDAHTWLSSVLSYHVTCLEGLEGLTTRAFIEADLENLISRAKTSLDMFVAIFPPKEKDYEEALVIDEFPSWVASEDRKLLESSSSVKDVIKPNVVVAKDGSGNFKTASEAVVSAPNNAQRRFIILVKKGTYVEQVNIGKTKSNLMLVGEGMDTTIIAGSLNNKDGQPISISGTISSDDPGLILKDLCIQNTAGAQKDQAVALRANEDRTVVYRCRIEGFQDTLYAQAQRQFYRECIIAGTVDFIFGDASTVIQNSKIIARRPINGQSNIVTAQKRSYPKENTGTSIQHCDIIPSPELGPVIGRIKTYLGRPWGSFSRTVVMESFIDKHVDPAGWQVWSSDEDPMVKTKTLYYGEYENKGPGADVSRRVKWSGFHVITNRADAFNFTVGRLINGRAWLPSTGVPFDVGL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1234 546 Pfam Pectinesterase 231 531 IPR000070 GO:0030599|GO:0042545
Sto5g1234 546 SMART PMEI_2 21 185 IPR006501 GO:0004857
Sto5g1234 546 PANTHER PECTINESTERASE 13 542 - -
Sto5g1234 546 Pfam Plant invertase/pectin methylesterase inhibitor 28 165 IPR006501 GO:0004857
Sto5g1234 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 190 IPR035513 -
Sto5g1234 546 CDD PMEI-like_4 39 189 - -
Sto5g1234 546 SUPERFAMILY Pectin lyase-like 228 545 IPR011050 -
Sto5g1234 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 183 IPR035513 -
Sto5g1234 546 Gene3D - 225 546 IPR012334 -
Sto5g1234 546 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
Sto5g1234 546 PANTHER PECTINESTERASE 13 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1234 Sto-Chr5 8310168 8312010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1234 24 542 Carbohydrate Esterase AT1G11580 45.747 2.91e-158 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1234 K01051 - gmx:100815836 525.398