Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1231 TTGGACACCCTTGACGACTTCTCCCCTACTTCTTTCCCTGCCCTTCATGTTCTTAGCCCAAAAGCCGCCACCGCGAGTGAGGAGTCTTCAAGGCTAGATCAATCACAAACAACTCATCATCGCCCACTTCAAACTTATTTACCCAGGAGCAACAAAAGACAGAAACTTTCGGATCCAGAGGAGCCAAGCCCGGATCATGATGATGGCCTACCCAAGATGTCTCATATTACTGTGGAACGCAACCGTCGGAAGCAAATGAACCACCATTTGTCCGTTCTCAGGTCCCTCATGCCTTGCTTTTACGTCAAACGAggAGATCAAGCCTCGATAATAGGAGGAGTGGTGGATTACATAAGCGAGTTGCAGCAGCTTCTACAATCCCTGGAGGCCAAGAAGCAGAGAAAAGTGTACACGGAAGTTCTGAGCCCTAGGGGGCTTGTGTCACCAAAGCCACCGGTGAGCCCTAGGCTGAGCCTGCCCATAAGCCCAAGGACCCCTTCTTCAGGCCCAGCAAGATTAATAATGTCGTCCTCGTCTCCCACATCTTCCGCTAATTCTTGCTCCATCAACGACAACATCAACGAGCTGGTCGCCAactccaagtcccacatcgccGACGTGGAGGTCAAGTTCTCTGGGCCCCACGTGCTCTTGAAAaccatatctcctccaatcccAGGTCAAGCTCTCAAAATCATATCCGCTCTCGAAGATCTAGCCCTTGAGATCCTCCACGTCAGCATTACCACCGCCGATGAAACCATGCTCAACTCCTTCACCATTAAGAGGAGGTTGAAGCAAAAAGTAAGGAAGCAAAGGATTGGTCTTGGACGGGGACATCCAGATTGTGTGTTTGGACTCTCAGCCCAGCCCGCAGATTGGCAAGTAGTTCTTCCTGGAATATATGCTGTTGATGAGGAGGATCTGTGGAGGGATCCCACTGGATGCTGCCTGCAGTGTGCAGGTGTGGTTTCCTCTGTATGTGATTTCAAATATGGTTGGGTCTTCATCAGATCTTTGCACTTGCTTTGTGGCCAAGCATCCTTGAACATTTCTATGAGTGCATCTAGTCTTCACTGCGAGGACTTGCAGGTGCGCTCAAAGGTGGGGACTCGGACATTGGAATTGCAATGGGTAGTGTGGGGTGAGATGAAGATGGGTGAGGCTTCCAATTAG 1176 0.4838 LDTLDDFSPTSFPALHVLSPKAATASEESSRLDQSQTTHHRPLQTYLPRSNKRQKLSDPEEPSPDHDDGLPKMSHITVERNRRKQMNHHLSVLRSLMPCFYVKRGDQASIIGGVVDYISELQQLLQSLEAKKQRKVYTEVLSPRGLVSPKPPVSPRLSLPISPRTPSSGPARLIMSSSSPTSSANSCSINDNINELVANSKSHIADVEVKFSGPHVLLKTISPPIPGQALKIISALEDLALEILHVSITTADETMLNSFTIKRRLKQKVRKQRIGLGRGHPDCVFGLSAQPADWQVVLPGIYAVDEEDLWRDPTGCCLQCAGVVSSVCDFKYGWVFIRSLHLLCGQASLNISMSASSLHCEDLQVRSKVGTRTLELQWVVWGEMKMGEASN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1231 391 MobiDBLite consensus disorder prediction 1 72 - -
Sto5g1231 391 CDD bHLH_AtFAMA_like 73 144 - -
Sto5g1231 391 Coils Coil 114 134 - -
Sto5g1231 391 MobiDBLite consensus disorder prediction 53 72 - -
Sto5g1231 391 MobiDBLite consensus disorder prediction 144 170 - -
Sto5g1231 391 Pfam Helix-loop-helix DNA-binding domain 72 122 IPR011598 GO:0046983
Sto5g1231 391 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 30 266 - -
Sto5g1231 391 MobiDBLite consensus disorder prediction 23 52 - -
Sto5g1231 391 Gene3D - 66 135 IPR036638 GO:0046983
Sto5g1231 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 138 IPR036638 GO:0046983
Sto5g1231 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Sto5g1231 391 SMART finulus 76 127 IPR011598 GO:0046983
Sto5g1231 391 PANTHER TRANSCRIPTION FACTOR FAMA 30 266 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1231 Sto-Chr5 8296218 8300105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1231 65 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 58.730 1.06e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g1231 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1231 K20558 - gmx:100808130 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1231 5 8296218 8300105 Sto5g1231 5 8296218 8300105 ECH