Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1203 ATGGTGGTGCCTAAACTATCATACGAGGAGAGTCGCCGCAAGAGATTGGAGGAGAACCAGAAGAGAATAGAAGCCCTTAATCTTCCACAGCTTTCTCAAGCCCTACGGAATTCCCCTTCTCCCAAACCCTCTCCGATGAAAAAGGCGAAATCTAGCTCAACCGAGAAACAGATTGTTGTCGTGAGGAGGTCCGGCCGCGTCGCAAACATGCCCGCTCCTGTTTACAAAGAAGTGCTTATTGATCGCGTAGCAATACCTAGAAGAGTATATGGCacaaaaagaaatttatcaAACCGGGTATATGCTTCGGAGGAAGCCAGGCAGAAAGCTTTTGTGAAAGCAGAAAAGTTAGTGTTGGatttagaacctgagtacccaacttttataaagTCAATGCTTCAGTCGCATGTAAGCGGGGGATTTTGGCTGGGCCTTCCAGTTTATTTCTGCAAGACTAGCCTTCCAAAGCGGGACGACATGATTACTTTGATAGATGAAGATGAGAATGAGTATCCTACTGTATATTTGGCCCGTAAAACTGGACTCAGTGGTGGATGGAAAGGTTTTGCAGTTGCTCATAATTTAGCTGATGGAGATGCATTGGTTTTTCAGTTAATCAGGCCTACAGCATTCAAGGTGTACATTATGAGGGTGGATAGTCCTACTCCTGCAGTGGGCGATCAGCTGGAATTGGTGCCATGGAATCAAAATTTCCTCCTAGTCGTTATTGTTTACAAAGTACTTCTATTCACTTTTAACAAGAATTTAATAGTTACTGACTTAATGACTTTCCTAGTTGCTTCTGAGGATTAG 813 0.4182 MVVPKLSYEESRRKRLEENQKRIEALNLPQLSQALRNSPSPKPSPMKKAKSSSTEKQIVVVRRSGRVANMPAPVYKEVLIDRVAIPRRVYGTKRNLSNRVYASEEARQKAFVKAEKLVLDLEPEYPTFIKSMLQSHVSGGFWLGLPVYFCKTSLPKRDDMITLIDEDENEYPTVYLARKTGLSGGWKGFAVAHNLADGDALVFQLIRPTAFKVYIMRVDSPTPAVGDQLELVPWNQNFLLVVIVYKVLLFTFNKNLIVTDLMTFLVASED 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1203 270 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Sto5g1203 270 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Sto5g1203 270 MobiDBLite consensus disorder prediction 27 57 - -
Sto5g1203 270 CDD B3_DNA 126 215 IPR003340 GO:0003677
Sto5g1203 270 SMART B3_2 128 219 IPR003340 GO:0003677
Sto5g1203 270 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 223 IPR044837 -
Sto5g1203 270 Gene3D - 102 220 IPR015300 -
Sto5g1203 270 PANTHER B3 DOMAIN-CONTAINING PROTEIN 1 223 - -
Sto5g1203 270 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1203 Sto-Chr5 8107982 8109913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1203 1 231 B3 DNA Binding Superfamily AT3G19184 51.064 4.06e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto5g1203 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1203 - - zju:107420903 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1203 5 8107982 8109913 Sto2g0614 2 5200513 5203173 ECH
Sto5g1203 5 8107982 8109913 Sto10g0199 10 1648649 1653000 ECH
Sto5g1203 5 8107982 8109913 Sto5g1203 5 8107982 8109913 ECH