Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1178 ATGTGGACAGATTCTTCTGTGTGTGTTTTCATATGGGAGGGAGACTTGGAGCTCCCTGAATTCTGTGGAGGCTACAGCAACGACGTCGTCCCCAAGTACGACTTTGCACCGCCTGAGCTGTGTTCTCCACAATTCGTcaatagtaatagtaatagtaataataataatgttaataTGGCTATGGCAGCATCGTCATTCACGAACTTGCAATCTAGTACAATCTGTTTCAGTCCTGGGCCTATGGGCCAAGAGGAAGGCCCATCAAGAGAGAAAAGTGGAATATCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGCGCAGGAACGTGAAGATTTCAAAGGATCCTCAGAGCGTGGCGGCTCGGCACCGGAGGGAAAGGATTAGCGAGAGGATTAGGATACTGCAGAGACTGGTGCCAGGAGGGACCAAGATGGACACCGCTTCCATGTTGGATGAAGCCATCCACTACGTCAAATTCCTCAAATCTCAGGTCCAGTCACTTGAACGCACTGCACCTAATAGGCCTACGGGCATGGGATTCCCTGTGCCAATGTCCACCGGCACTCCCAATACTCCCGCCTCTTCTTTTCCTCTCACAATGCCTAATTAccaacctcctcctcctcctcaccATAATCATCAGCGTTACGGAGATGCATGA 714 0.4762 MWTDSSVCVFIWEGDLELPEFCGGYSNDVVPKYDFAPPELCSPQFVNSNSNSNNNNVNMAMAASSFTNLQSSTICFSPGPMGQEEGPSREKSGISMAAMREMIFRIAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQSLERTAPNRPTGMGFPVPMSTGTPNTPASSFPLTMPNYQPPPPPHHNHQRYGDA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1178 237 MobiDBLite consensus disorder prediction 201 216 - -
Sto5g1178 237 MobiDBLite consensus disorder prediction 189 237 - -
Sto5g1178 237 CDD bHLH_AtIND_like 130 186 - -
Sto5g1178 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Sto5g1178 237 SMART finulus 135 184 IPR011598 GO:0046983
Sto5g1178 237 Gene3D - 128 192 IPR036638 GO:0046983
Sto5g1178 237 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 48 223 - -
Sto5g1178 237 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 48 223 IPR045843 GO:0003700|GO:0006355
Sto5g1178 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 188 IPR036638 GO:0046983
Sto5g1178 237 Pfam Helix-loop-helix DNA-binding domain 138 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1178 Sto-Chr5 7907672 7910212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1178 17 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 59.429 2.47e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g1178 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1178 - - zju:107419982 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1178 5 7907672 7910212 Sto5g1178 5 7907672 7910212 ECH