Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1070 ATGGGTGGTCATGAAAATGCCATGGGTTTTCAACATGGACAAGAGAGCATCCTGAATAATTGTCCATCATCGGGTTTGAGCACTAATGTTTCTGAAATTGGAATTAGCTCTGTGTCTATGGTTAAACCTCCCATTGTGGCCAATCCCTTTCTTGGTTCTTCTTCCACTTGGGATCCCCTTGTCTCACTGAATCAAACTCAAACCTTTGGAGGCTCCCCCATGGTTTCTCATAGTGAATTTGGCAATTCTTCTTACCCTCTTGTGTTGGAAAACCAGGGATTGAGTAGCACCTCTCACCTTGTTCAATACATGTCTGACTCCAATTTTGCGGTTCCCTCCTATGGTAGTGGAAGCTTCTCAGAAATGGTTGGTTCTTACCCTCAAACTGCATGTGGTGATTTAGCTAATTCAGGGTATAGGCCAAATTATCATCCAAACGAGGAGGCTTCCATGAAAAGGGCTCAACTAAATGGTGCACAATCTCAGCTTGAGGATTCTACTCCTGAAGAAGGAGCCACAGGATCTGCACCTAATGGAAGTGGAAGAAAACGAGGGCTTGATCACAATTCTACTTTCAGTGCAAATAAGAATGCTGAAGGGGAACCACTGAAGGATCCTTCTAGGAAGAGCTCTGATGGTGTGAAAGAACAAGATGAAAAGAGACAAAAGATTGAGGAGAGTAATACTAGTGCAGATTTGCGTGGTAAGCAGTCATCAAAGCAAGGTAAAGACAACTCTCACAGTGAAGAAGCTCCCAAAGAGAATTTCATTCATGTAAGGGCTCGAAGAGGTCAAGCTACAAACAGTCATAGCCTTGCAGAAAGAGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGGAAAGCTGTAATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCAGAACTGAATTTTGATGTAGAGCGAATCCTATCCAAAGATATTCTTCAGTCCCGCATTGGAACCGGGGCGATCGGTGGATATGGTATGAACTCCTCTCACGCATTCCCTAGTGGAAGTTTTCAGGGAACCCTACAAGGCATACCAAGCACATCACCACAATTCCATCCTTTGCCTCAGAATATTTTGGAGCATGAGTTCCAAAATTTGTATGGAATGGGATATGATTCCAGTGCAGCTCTAGACAACTTGGGATCCAATGGGAGGTTGAAAACAGAGTTGTAA 1275 0.4361 MGGHENAMGFQHGQESILNNCPSSGLSTNVSEIGISSVSMVKPPIVANPFLGSSSTWDPLVSLNQTQTFGGSPMVSHSEFGNSSYPLVLENQGLSSTSHLVQYMSDSNFAVPSYGSGSFSEMVGSYPQTACGDLANSGYRPNYHPNEEASMKRAQLNGAQSQLEDSTPEEGATGSAPNGSGRKRGLDHNSTFSANKNAEGEPLKDPSRKSSDGVKEQDEKRQKIEESNTSADLRGKQSSKQGKDNSHSEEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIGTGAIGGYGMNSSHAFPSGSFQGTLQGIPSTSPQFHPLPQNILEHEFQNLYGMGYDSSAALDNLGSNGRLKTEL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1070 424 CDD bHLH_AtBPE_like 255 340 - -
Sto5g1070 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 333 IPR036638 GO:0046983
Sto5g1070 424 Gene3D - 262 336 IPR036638 GO:0046983
Sto5g1070 424 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 424 - -
Sto5g1070 424 Pfam Helix-loop-helix DNA-binding domain 268 316 IPR011598 GO:0046983
Sto5g1070 424 SMART finulus 271 321 IPR011598 GO:0046983
Sto5g1070 424 MobiDBLite consensus disorder prediction 201 230 - -
Sto5g1070 424 MobiDBLite consensus disorder prediction 237 260 - -
Sto5g1070 424 MobiDBLite consensus disorder prediction 153 174 - -
Sto5g1070 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Sto5g1070 424 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 14 424 IPR024097 GO:0006355
Sto5g1070 424 MobiDBLite consensus disorder prediction 153 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1070 Sto-Chr5 7230075 7232225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1070 1 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.857 4.17e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g1070 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1070 - - gmx:100794464 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1070 5 7230075 7232225 Sto5g1070 5 7230075 7232225 ECH