Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1063 ATGCATATGTATGAGACAGGGCTTGGACTGGGACTTGGTCTTGGAGTGCATGAATCAGATGAGAAAGAGAGGGCTCAGAAGAATTGGAAGGTGGAGGAGGATGCAATATTCATCAAGTGTAATAATAAGGTGAAGGTGTACCCATCTCTTACGTTAGGACCACCCCATCATCATGAAGAAGCTGCACCTACTGAATCtgccaattataataataataataatttgcaaTCAGTAGTAGAGCTAGAGCATCATCAGTCTTCTCCAAGCGCAGGATCTTCATTTTCCAACTGCTCTAGCATCATGAAGAGGGAGCATAGAGAGTTTGTGGGTGATCATCAATTAGAGAATATTGATGTAGAGGTAGACACCAAGATGCTTCCTAATTCCAACTTAGCTACTGAGCTTGACGAAGATGGCAATCCCAGGAAGAAACTTAGGCTCACTAAACATCAATCTGCAGTTTTGGAGGATAGCTTCAAACATCATTCTACTCTCAACCCAAAGCAAAAGCAAGATCTGGCTAGAAACCTAAACCTGCGTGCCAGACAAGTAGAAGTGTGGTTCCAAAACAGGAGAGCCAGgacaaaattgaaacaaacCGAAGTGGATTGTGAATTACTGAAGAAGTGCTGCGAAACGCTAACGGAAGAGAACAAGAGACTGCAAAAGGAGGTGCAGGAGCTAAGAGAAATGAAAACGACGTCGCCACAGGGAGGCTTTTATATGCAGCTTCCGGCAGCCACTCTCAGCTTATGCCCTTCTTGTGAGAGAATTTGCGGTGGCGGAAGTGGCGGCGCCGCCTCCCATGGCACTCCTGCCACCACCGCCTTCCTTATTGGGCCTAAGGCCCATCACTTGTACAAAAGTAATTATCCACTCACCCACTCATCCGCAGcctgctag 903 0.4419 MHMYETGLGLGLGLGVHESDEKERAQKNWKVEEDAIFIKCNNKVKVYPSLTLGPPHHHEEAAPTESANYNNNNNLQSVVELEHHQSSPSAGSSFSNCSSIMKREHREFVGDHQLENIDVEVDTKMLPNSNLATELDEDGNPRKKLRLTKHQSAVLEDSFKHHSTLNPKQKQDLARNLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKEVQELREMKTTSPQGGFYMQLPAATLSLCPSCERICGGGSGGAASHGTPATTAFLIGPKAHHLYKSNYPLTHSSAAC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1063 300 Coils Coil 204 234 - -
Sto5g1063 300 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Sto5g1063 300 PANTHER - 4 299 - -
Sto5g1063 300 CDD homeodomain 141 199 IPR001356 GO:0003677
Sto5g1063 300 Gene3D - 136 203 - -
Sto5g1063 300 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 299 - -
Sto5g1063 300 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Sto5g1063 300 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Sto5g1063 300 SUPERFAMILY Homeodomain-like 139 206 IPR009057 -
Sto5g1063 300 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355|GO:0043565
Sto5g1063 300 SMART halz 198 244 IPR003106 GO:0006355|GO:0043565
Sto5g1063 300 SMART HOX_1 140 202 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1063 Sto-Chr5 7153205 7154407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1063 136 300 Homeobox Transcription Factor Family AT2G22800 62.147 4.32e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto5g1063 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1063 K09338 - gmx:100797650 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1063 5 7153205 7154407 Sto5g1063 5 7153205 7154407 ECH