Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1059 atgatgatCGGAGAACCAACACGTTTGGTCCCCAACCTTCAAATTTCTCATCCCCACACATCTCCCACACCATTCCCCACTCACCTCAACTTCAATGCCAATCCCGACTTCCCACCTTCCATTGATTTCGACTTACTCTGCCACCACGACGATGATCTCGACGACGTCGTCCTCCCTTTCGATGCCTTCTCCGCCGATCATTTCCGCATGTTCGAGTTCAAGATCCGCAAATGCGCACGTGCCAGATCACATGACTGGACCCAGTGTCCCTACGCCCATCCCGGCGAGAAGGCCCGCCGGAGAGATCCTCGCAAGCATCACTACTCCGGCGCCGCCTGCCCCGAGTTCCGCAAAGGAAATTGCCGGAAGGGCGATTCCTGCGAGTTCGCTCACGGAGTCTTCGAATGCTGGCTCCACCCCTCTCGCTACAGGACTCAGTTCTGCAAGGACGGAATCAACTGTCGCCGTCCAGTCTGTTTCTTCGCCCACAGCCCTGATCAATTGCGATTCCTCGTCAACAACTCCGCCGATTCTTCATCCGACGCGCCGATTTCCTGTCTCGCTTCTACCTTCGTCTCGTCGCCTACGTCAGTCCTCAACTCCTCGCTGTCGCCGCCTACCTCGCCGGGGAGTTCCCGATACGGCGGCGTGTGCGAAATAGCCACCTCATTGCGTAACGTTCAGCTTGATGAGAATTATAAGCCGCCTTCCTCAACTCGCGGCTTGGCTTCACCTCGCGCCTTCGGGTTCGGTTCACCGCGCGGTTCGAATCTCCGACCCGGGTTTCCGAATCGGAGCCAGCATGAAGAACCTGCTATGGAGAGAGTGGAATCGGGAAGAGAACTGAGAGCCAAAATTTACGCTAAGCTCACAATTTTCTCTCTGCACGTCGTGGCTATATTATTGGTGTTCGTTAAATCGTTTTCTGGGGGTAAAAAGTGGGTCTTTGTCTTCAACCTTGGATTCCTTTACTGGTTCTGA 981 0.5464 MMIGEPTRLVPNLQISHPHTSPTPFPTHLNFNANPDFPPSIDFDLLCHHDDDLDDVVLPFDAFSADHFRMFEFKIRKCARARSHDWTQCPYAHPGEKARRRDPRKHHYSGAACPEFRKGNCRKGDSCEFAHGVFECWLHPSRYRTQFCKDGINCRRPVCFFAHSPDQLRFLVNNSADSSSDAPISCLASTFVSSPTSVLNSSLSPPTSPGSSRYGGVCEIATSLRNVQLDENYKPPSSTRGLASPRAFGFGSPRGSNLRPGFPNRSQHEEPAMERVESGRELRAKIYAKLTIFSLHVVAILLVFVKSFSGGKKWVFVFNLGFLYWF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1059 326 ProSiteProfiles Zinc finger C3H1-type profile. 108 134 IPR000571 GO:0046872
Sto5g1059 326 PANTHER UNKEMPT FAMILY MEMBER 39 291 IPR045234 -
Sto5g1059 326 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 39 291 - -
Sto5g1059 326 SMART c3hfinal6 107 133 IPR000571 GO:0046872
Sto5g1059 326 SMART c3hfinal6 142 165 IPR000571 GO:0046872
Sto5g1059 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 132 IPR000571 GO:0046872
Sto5g1059 326 Gene3D - 107 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1059 Sto-Chr5 7119021 7120332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1059 63 209 C2H2 Transcription Factor Family AT5G12850 54.430 7.41e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto5g1059 zf-CCCH 6.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1059 - - gra:105792976 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1059 5 7119021 7120332 Sto5g1059 5 7119021 7120332 ECH