Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1041 ATGAACAGGAGTTTGAACAGAGAGAATCCAGATATTTTGATTGTGATGATTGCAGAGAAGCAGATAATAGGAGGTGGTGAGGAGGACAAAAGAGATCAGAGACTAGGGATGATGATGGGCCCAGTAGCCATTTATTTCTTACTTCTTTCtccctttttttctctttctaggTTCTCGGAGGACTCGATTACTACATCATATACTGGCATTCAGATGGAGAATGATATGTTCAGTGCTCCAATGGGCATTATGGGTGGCCGAAGCTCTGGTGTCATAGATCATGAAATTCCTCAAACGCCAAATCCATTCAATATTCAGTGCTATTCCTTTGACCTCAATGACCAAACACGCATCATGAGTGGGATTTCAATGCTGCAAGGAGAACTCATGAGCAATGTACACTCACAAGTTCCTCTAACAAGTCCTGCCTGCAATAATATTGCTGATTCTAACTCCTTACTTCACTCACAAGGAAAGAACATTCTTGTGGGAGATTCCTCTCTTGGACCTCCATGTCCTCCCTTAAACACCACTGAGTTTCAAGACCAACTAGCTATCACTCCTGCTTCACTTGCTGCCATTCTTGCTGCAAGATTTGGTCTTCAAGAGAAATCACCAGCTCTGTCTCCTTCATTGGACACACTGGCTCCATATATGTTAAATAACTGGCAGGATACTTCCAACCCTTCTCTTCCTACTTTTGGGGATGAAGTACCCACTACTTATTCATCCATGCCTAATCTGGATCCTAATGGATGGACATCCTCAAATGCTGCAAACTTGACCCATCATGCTTATGATTCCCCTAACTTTAGCAACGAGCTGTCTTTAAGTCTAGCCACTTCTCCAACCACAGGTCAGTGCTCAGAGTTGAGTTCTGATGTGAGCCATTCCTGCAGTAGTAGGGAGATTTGTAGGAGTTTGGGGGGTTCAAATAGACATGTGAGTTTTTCACAAGCAATATTGGGGTCCAGATATCTCACTGGGATTCAAGAAATTCTTGCTCAAATTGCAAGGTTTTCACTTGAAAACATAGAACTGATTAATGGTAGCAGAGGCAGAGCAGAAGGTAATACATCAACCTCAGCTTTCCAACAAAAGAGAATGATGGAAACAAATCACAGCGCAGATTCTATGTTTGAAACAATTGTGGATTCCTCAATGGAAAGACAAGATCTTGTCCTAgctgaatcaaagaaatcccaaCTTCTGACACTTTTACAACTGGTGGACAGCCGATATAATCAGTGTTTGGATGAGATACATACGGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCACATGTTCATGCACATTTTGCTCTTAGAACAATCTCCTTGTTGTACAAGGATCTGCGAGAGAGGATTAGCAATTATATTCTTGCCATGGGAGCAACATTTAGCAGCAACTCATGCTCAGAAGAGGAGAAGGAAAGGTGTGCGGAAGCTTCATTCATCCAAAAGCAATGGGCTTTGCAGCAGTTGAAGAAAAAAGAACATCAATTATGGAGGCCTCAAAGGGGATTGCCTGAAAGATCTGTCTCAGTTCTTCGGGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAAAAGCACTTGCTTGCAGTAAAAAGTGGATTGACTAGAAGCCAGGTGTCCAACTGGTTTATAAATGCTCGCGTGAGACTATGGAAACCTTTGATTGAGGAAATGTATGCTGAAATGAACAAAAGGAAGGCTCTTCGAAATGAAGAAGGAACAAGCTTGAGCAATCAAAGATTTAATGTCAACTGA 1791 0.4126 MNRSLNRENPDILIVMIAEKQIIGGGEEDKRDQRLGMMMGPVAIYFLLLSPFFSLSRFSEDSITTSYTGIQMENDMFSAPMGIMGGRSSGVIDHEIPQTPNPFNIQCYSFDLNDQTRIMSGISMLQGELMSNVHSQVPLTSPACNNIADSNSLLHSQGKNILVGDSSLGPPCPPLNTTEFQDQLAITPASLAAILAARFGLQEKSPALSPSLDTLAPYMLNNWQDTSNPSLPTFGDEVPTTYSSMPNLDPNGWTSSNAANLTHHAYDSPNFSNELSLSLATSPTTGQCSELSSDVSHSCSSREICRSLGGSNRHVSFSQAILGSRYLTGIQEILAQIARFSLENIELINGSRGRAEGNTSTSAFQQKRMMETNHSADSMFETIVDSSMERQDLVLAESKKSQLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPHVHAHFALRTISLLYKDLRERISNYILAMGATFSSNSCSEEEKERCAEASFIQKQWALQQLKKKEHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNKRKALRNEEGTSLSNQRFNVN 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1041 596 ProSiteProfiles 'Homeobox' domain profile. 502 565 IPR001356 GO:0003677
Sto5g1041 596 SMART HOX_1 505 569 IPR001356 GO:0003677
Sto5g1041 596 Pfam Associated with HOX 321 459 IPR006563 -
Sto5g1041 596 Gene3D - 508 587 - -
Sto5g1041 596 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 591 - -
Sto5g1041 596 CDD homeodomain 505 565 IPR001356 GO:0003677
Sto5g1041 596 Pfam Homeobox KN domain 522 561 IPR008422 GO:0003677|GO:0006355
Sto5g1041 596 SMART prehox3 315 460 IPR006563 -
Sto5g1041 596 PANTHER HOMEOBOX PROTEIN ATH1 91 591 - -
Sto5g1041 596 SUPERFAMILY Homeodomain-like 507 574 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1041 Sto-Chr5 6996522 6999545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1041 273 578 Homeobox Transcription Factor Family AT4G32980 55.660 2.03e-104 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sto5g1041 POX 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1041 - - gmx:100812648 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1041 5 6996522 6999545 Sto5g1041 5 6996522 6999545 ECH