Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1039 ATGGGCAGGAAGTGCTCGTATTGTGGAAACTTGGGTCACAATTCAAGGACTTGTAATAGTTATAATAGAGGTGGCCTAAAGATCTTCGGAGTACAACTTgacccttcctcttcctcttctccatctACATACAATTTTTCCATCAAAAGAAGTTTCAGCATGGACTGCTTCCCATCTTCCCACACATCCTTATCCCCaccctcctcctcttcctcatcACCCAATTCTCTGCTTGAACCAATTCATCATGACAATTCAGATCATAAAATGTCTGATGCTTACTTACCCAATGACCTCATAACAAGAAcccaagaaagaaaaaaagGCGTGGCATGGACGGAGGAAGAGCACCGGATTTTTCTTATAGGGCTTAAGAAACTGGGGAAAGGTGACTGGAGAGGCATCTCTAAGAATTTTGTGACTACGAGAACACCCACACAAGTGGCAAGTCATGCACAAAAATACTTCCTCCGTCAGAATAACTCCAATAAAAGAAAGCGCTACCATACCCTCCTTCATGTGGAACAACAAAATACCACTGTTGAACCAATTTCTTGCTTTTCTGAGCCAATTAAAGCTCTCGGTCCTTTTGGGTTCGCATCTGAGACTACAGAAGATACTAGTTGCAGCAACCTATGGAAAAGCAAAAGGATGTGTGTGTCTCAGTGGCTTTCAAGTGCTCATCATTCAGCTGGGCTTAATTGGTTTACCTCTTTGGCCAAGTACACTAGTACTATTCAAAGTGTTGAACCTGATTTAGAACTCAAACTTGCGGCTCCCACGCCATTCAAGCTTCGTGGACCTTCCATAAGTTGA 816 0.3922 MGRKCSYCGNLGHNSRTCNSYNRGGLKIFGVQLDPSSSSSPSTYNFSIKRSFSMDCFPSSHTSLSPPSSSSSSPNSLLEPIHHDNSDHKMSDAYLPNDLITRTQERKKGVAWTEEEHRIFLIGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKYFLRQNNSNKRKRYHTLLHVEQQNTTVEPISCFSEPIKALGPFGFASETTEDTSCSNLWKSKRMCVSQWLSSAHHSAGLNWFTSLAKYTSTIQSVEPDLELKLAAPTPFKLRGPSIS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1039 271 PANTHER TRANSCRIPTION FACTOR KUA1 1 266 - -
Sto5g1039 271 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Sto5g1039 271 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Sto5g1039 271 CDD SANT 111 156 IPR001005 -
Sto5g1039 271 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Sto5g1039 271 SUPERFAMILY Homeodomain-like 105 161 IPR009057 -
Sto5g1039 271 MobiDBLite consensus disorder prediction 63 92 - -
Sto5g1039 271 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Sto5g1039 271 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 266 - -
Sto5g1039 271 Gene3D - 112 161 - -
Sto5g1039 271 MobiDBLite consensus disorder prediction 63 80 - -
Sto5g1039 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Sto5g1039 271 SMART sant 108 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1039 Sto-Chr5 6981878 6982894 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto5g1039 Myb_DNA-binding 4.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1039 - - zju:107420077 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1039 5 6981878 6982894 Sto5g1039 5 6981878 6982894 ECH