Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1022 ATGAAGGGGCTCACAGTACTAAAAGAGGAAGAAGCCATATCATCTTCAAGCTTAAGCCCTCGCCCCATGGAAGCACTGCACGAGATGGGTCCCCCTCCATTTCTTACCAAAACCTTCGATATGGTGGAAGACCCATCCACGAACTCCATCGTTTCCTGGAACACAGCTCGTAATAGCTTCATTGTGTGGGACTCTCACTCCTTCTGCACTACCATTCTTCCTCGCTACTTCAAGCACAGTAATTTCTCCAGCTTCCTTCGCCAACTCAATACCTATGGTTTCAGAAAAGTTGATCCTGACCGATGGGAATTCGCAAACGAGGGGTTTTTGGGAGGAGAGAGGCAGCTATTGAAGAGCATAAAGAGGAGAAGAAATAGGGTGTCGTGGGTGCAGTCAGAGAGCAAGCAGAAACATGGACGAGAGGCTTGTGTTGAAGTGGGAGAGTATGGATTGGATCAAGAATTGGAGAGGTTGAGGAGAGACAGGAAGGTTTTGGTGAAGGAGATTGTGAGGTTGAGGCAGCAAGAGCAAAATTCAAGGGAGAAATTGAAGGATGTGGAAGATAAATTAGAGAAGACAGAGAAGAAACAGCAACGGATACTGAGTTTTCTTGCTAAAGCGCTGAACAACCCATCTTTTGTGCAACAGTTTGGGCAGAAGAGAGAAGGTGTTGAGATTGGAGGAAAGAGGAGACTGAAAGATAGGGAGAAGATTGAAGAAGATGGTTTTAGTGTTAGTGTTATGGAGTGTGAGATGGAGAGTCTCTTGTCACTGTCAGCTGCTTGTGAAATGAAAGAGCCAATTGCAACAGTGTGGGAGGAGTTGCTGAAGGAGGAAGTTGTAATTGGTGATTGTTCCCAAATTGATGGAGCCGTGGAGGATTTGGTAGAGAACCCCGATGAGTGGGCTCAGGATCTAGAGGAGCTAGTGGATGAATTGGGTTTTATGGGAAATCAACCTTAG 963 0.4611 MKGLTVLKEEEAISSSSLSPRPMEALHEMGPPPFLTKTFDMVEDPSTNSIVSWNTARNSFIVWDSHSFCTTILPRYFKHSNFSSFLRQLNTYGFRKVDPDRWEFANEGFLGGERQLLKSIKRRRNRVSWVQSESKQKHGREACVEVGEYGLDQELERLRRDRKVLVKEIVRLRQQEQNSREKLKDVEDKLEKTEKKQQRILSFLAKALNNPSFVQQFGQKREGVEIGGKRRLKDREKIEEDGFSVSVMECEMESLLSLSAACEMKEPIATVWEELLKEEVVIGDCSQIDGAVEDLVENPDEWAQDLEELVDELGFMGNQP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1022 320 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 14 249 - -
Sto5g1022 320 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1022 320 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1022 320 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1022 320 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 249 IPR027725 -
Sto5g1022 320 Gene3D - 26 124 IPR036388 -
Sto5g1022 320 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1022 320 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1022 320 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g1022 320 Coils Coil 155 196 - -
Sto5g1022 320 SUPERFAMILY "Winged helix" DNA-binding domain 30 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1022 Sto-Chr5 6862585 6863688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1022 20 320 HSF AT2G26150 52.830 1.07e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto5g1022 HSF_DNA-bind 4.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1022 K09419 - gmx:100794605 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1022 5 6862585 6863688 Sto9g3432 9 33851288 33852990 CCT