Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1005 ATGGAGAAGGTGGCCGCTGCAAAAAAGTTCATAGAGAATCACTATAGAGCTCAAATGAAGAATATCCAAGAGCGGAAGGAGAGaCGTTGGATTTTAGAAAGGAAATTAGCTTCCTCAGATGTTCCAAATGAGGAACGGATCAACCTCATCAAAGATTTAGAGCGAAAAGAGACAGAATATATGCGATTAAAAAGGCACAAGATATGTGTTAacgattttgaacttttgaccATTATTGGAAGGGGGGCCTTTGGAGAGGTTAGATTGTGTCGGGAGAAGAAATCTGGAAACATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAAGAGAGGCCAGGTGGAGCATGTTAGAGCTGAAAGAAACTTACTGGCTGAAGTTGCCAGTCATTGCATAGTGAAACTTTATTACTCATTTCAGGACGCTGACTACCTGTATTTAATTATGGAATATCTTCCTGGGGGTGACATGATGACTCTGCTGATGAGGGAAGACACCTTAAGTGAAGGTGTTGCTAGATTTTACATTGCACAGAGCATTCAGGCCATAGAGTCCATTCATAAGCACAACTACATTCACAGAGATATTAAACCAGATAATCTACTTCTGGACAAGAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTCGATTGTTCTAGTACTACCCTGTCTACACTGCATGAACATCAGACCATGGATGATGAAAATCTATCAGAAGCAATGGATATTGATGGATGTTTTCCTGATACCGATAATCAGAGCAGTTGGAGAAGTGCACGTGAACAGCTTCAGCATTGGCAGATGAACAGGAGAAAATTGGCATTTTCTACTGTGGGAACACCGGATTACATTGCTCCTGAAGTACTATTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTAGGAGCAATAATGTACGAAATGCTTGTTGGTTACCCTCCATTTTATGCAGATGATCCAATAACGACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAGATTTCCAGAAGATTCACAATTGACGCATGAGGCCAAGGATTTAATCTGCAGATTGCTGTGTGATGTTGAACATAGGTTAGGGACCCGAGGGGCACATGAAATAAAGGCTCATCCTTGGTTCAAGGGTGTGGAGTGGGATAAATTGTATGAAATGGAGGCAGCATTTAAGCCGCAAATCAACGGGGAGCTGGACACCCAAAACTTCATGAAGTTTGATGACGTAGATCCACCAACAGTAATGCAAAATGGGATGGGACCCTCACGAAAGATGCTATTAACACCCAAAGATCTAAATTTTGTTGGTTACACCTACAAGAACTTTGATGCGGTGAAAGGGCTTCGCCAGTTTGGTGATTCCATGCAAGGTTTTTCTTCTAAACAGGCAGCTGAGGAAACAGGTTTACAAATGCTAACTTCATCGGGGGATCCCATGTTATCATAA 1467 0.409 MEKVAAAKKFIENHYRAQMKNIQERKERRWILERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDMMTLLMREDTLSEGVARFYIAQSIQAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSSTTLSTLHEHQTMDDENLSEAMDIDGCFPDTDNQSSWRSAREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPITTCRKIVHWRNHLRFPEDSQLTHEAKDLICRLLCDVEHRLGTRGAHEIKAHPWFKGVEWDKLYEMEAAFKPQINGELDTQNFMKFDDVDPPTVMQNGMGPSRKMLLTPKDLNFVGYTYKNFDAVKGLRQFGDSMQGFSSKQAAEETGLQMLTSSGDPMLS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1005 488 SMART serkin_6 73 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1005 488 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Sto5g1005 488 SUPERFAMILY Protein kinase-like (PK-like) 56 429 IPR011009 -
Sto5g1005 488 Gene3D Transferase(Phosphotransferase) domain 1 159 399 - -
Sto5g1005 488 Gene3D Phosphorylase Kinase; domain 1 64 158 - -
Sto5g1005 488 SMART pkinase_C_6 383 448 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sto5g1005 488 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 1 472 - -
Sto5g1005 488 ProSiteProfiles AGC-kinase C-terminal domain profile. 383 456 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sto5g1005 488 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 472 - -
Sto5g1005 488 ProSiteProfiles Protein kinase domain profile. 73 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1005 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Sto5g1005 488 CDD STKc_NDR_like 71 447 - -
Sto5g1005 488 Pfam Protein kinase C terminal domain 401 446 IPR017892 GO:0004674|GO:0005524|GO:0006468
Sto5g1005 488 Pfam Protein kinase domain 274 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1005 488 Pfam Protein kinase domain 74 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1005 Sto-Chr5 6763924 6771407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1005 1 487 AGC Kinase Gene Family AT4G33080 78.980 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Sto5g1005 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1005 K08790 - gmx:100805455 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1005 5 6763924 6771407 Sto5g1005 5 6763924 6771407 ECH
Sto5g1005 5 6763924 6771407 Sto9g3420 9 33797142 33804927 ECH