Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1003 ATGGAGGAGATGTCGTCCGCAGTTGCAGTGCCATTAAGAATAGGTAATTCAGTCTGTGATAACCCAACCATAGCCACTCACATGGATTTATCCAGACTTAAGCTCATGGCAGATGCGGGTTCGTTAGTTAATTCTATAAGTAAGGTTTCCACTGAGACAGGTGCGGATTCTAATGAGGATCTTAATGGTAACAATTTGGAGGATGATGTTAGTATCACAGCAGTCACACCTCCAAAACAGGATAGAGAAGGAGAAATTCCTTTGTTGGATATGATATCCCAAAACAAAACTGCCTTGGTTGCTGGCGCAGAAGCTTTAACCCCAGATATTGAGGAGGATGATTCATTATCATTCGAAGTGGCCAGTGAGAACAGTAGCATATGTGGAGAGGAGTTCGTTGGTTTTGATGCTACCTCAGAAGTGGGGTTACCAAGTCCCATGGACATTGAGAAGCGCATATGCGATGTCAATATTGTAGCCAGGGATGCTGATTTGGAGGAAAATGTTGATGCCGAAATTGTGAGCGAACCCCTTGCAGTGGCAGTGAGCCTCGAAGAAGAGACTGGAGATAGATCTGGCCCAAACCCTTCTGCAGTTGTTCTTCAGCTGCCCCTGGAAAAAAGGGTTAGTGGAGCAGTTGGTCGCAGTGTTTTTGAATTGGATTATGCCCCACTATGGGGATATATATCTGTATGTGGAAGAAGACCCGAGATGGAAGATGCAGTTGCAACTGTACCTCGATTCTTGAAGATTCCTATTCAAATGCTAATTGGGGATCGTGTAATTGATGGAATGAGCAAGTGTTATGGTCAGCAGACAATTCATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAgGTAGCAGATTATTGTCGTGACCGTATTCATTTGGCTTTGGctgaagaaatagaaaatgtcAAGGAAGGTTTAATTAATGGAAGTATTAAGGCTGATTGTCAAGATCAGTGGGAAAAAACTTTCACCAATTGTTTTCTAAAGGTTGATGCTGAAGTTGGAGGGAACTCTAATTGTGAACCTATTGCTCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTATTATTTGTTCGTCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCAGTTCTGTGTCGTGGCAAAGAACCCATGGCATTGTCAGTGGATCATAAACCAAATCGAGAGGATGAATATGCTAGAATTGAGGCAGCTGGAGGCAAGGTGATACAATGGAATGGTCATCGTGTATTTGGTGTACTTGCAATGTCAAGATCTATTGGTGATAGGTATTTGAAGCCATGGATAATTCCAGAACCAGAGATTACAGTTATTCCACGTGCAAAAGAGGATGAATGCCTCATTCTGGCAAGTGATGGTCTTTGGGATGTGATGACAAATGAAGAGGCATGTGAGCTAGCACAGAGACGAATACTTCTGTGGCACAAGAAAAATGGCATTGCACTACCCCCAGAAAGGGGAGAAGGAATAGATCCTGCAGCACAAGCTGCTGCAGAGTACCTGTCAAACCGGGCTCTTCAGAAAGGAAGCAAAGATAACATCACTGTGATCGTGGTGGATTTGAAAGCTCACAGAAAATTTAAAAGCAagacatga 1620 0.4253 MEEMSSAVAVPLRIGNSVCDNPTIATHMDLSRLKLMADAGSLVNSISKVSTETGADSNEDLNGNNLEDDVSITAVTPPKQDREGEIPLLDMISQNKTALVAGAEALTPDIEEDDSLSFEVASENSSICGEEFVGFDATSEVGLPSPMDIEKRICDVNIVARDADLEENVDAEIVSEPLAVAVSLEEETGDRSGPNPSAVVLQLPLEKRVSGAVGRSVFELDYAPLWGYISVCGRRPEMEDAVATVPRFLKIPIQMLIGDRVIDGMSKCYGQQTIHFFGVYDGHGGSQVADYCRDRIHLALAEEIENVKEGLINGSIKADCQDQWEKTFTNCFLKVDAEVGGNSNCEPIAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEITVIPRAKEDECLILASDGLWDVMTNEEACELAQRRILLWHKKNGIALPPERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAHRKFKSKT 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1003 539 ProSiteProfiles PPM-type phosphatase domain profile. 225 529 IPR001932 -
Sto5g1003 539 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 100 539 - -
Sto5g1003 539 ProSitePatterns PPM-type phosphatase domain signature. 276 284 IPR000222 GO:0043169
Sto5g1003 539 SMART PP2C_4 215 527 IPR001932 -
Sto5g1003 539 MobiDBLite consensus disorder prediction 51 71 - -
Sto5g1003 539 Pfam Protein phosphatase 2C 260 522 IPR001932 -
Sto5g1003 539 MobiDBLite consensus disorder prediction 51 83 - -
Sto5g1003 539 CDD PP2Cc 227 529 IPR001932 -
Sto5g1003 539 SUPERFAMILY PP2C-like 222 530 IPR036457 -
Sto5g1003 539 Gene3D - 212 539 IPR036457 -
Sto5g1003 539 PANTHER ALPHABET, ISOFORM E-RELATED 100 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1003 Sto-Chr5 6758576 6761102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1003 1 539 PP2C-type Phosphatase Gene Family AT1G17550 49.910 4.96e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1003 K14497 - gmx:100805281 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1003 5 6758576 6761102 Sto5g1003 5 6758576 6761102 ECH