Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0989 ATGGGTTGGGGTCACCTGGGAAGAAATCCGCACTCAAATTCGGGTGACCCGGGTGTGAGTGCGGAGGCAGCTTCCGCCACGGCCTCCCTACCACCGCGATTCCCCCTTGCGGCTCAGCCTGAGATCATGAGGGCTGCTGAGAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGTCGCGACGCATTCCGTCACCTCTTCGGTACTAGAGTTGCAGTTACCTACCAAAGTGAGACGAAACTTTTGGGACAGATGCTTTACTATGTGCTGACGACAGGTTCAGGACAACAGACGCTAGGAGAGGAATACTGTGACATCACCCAGGTTGGAGGACCTTACGGACTCCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTGTACCAGACAGCTGTTCCATATATTGCAGAGAGGATTAGTTCTAGAATTGCTTCCCGTGGAATTGCCCTTGCTGATTCACAATCTGCAGAGATCTATGGTGAAGACACCATCAGGAGCAGTGAATCTCAAATTTCTGCAATGAGGGAACTTCCGTCTTCTTCCACATCAGGGCAATCTGTTACAGCTCTGGCAAGGTTGAAGGAGAAATTGAGTGGATTTTGGTTGAATGTAGTTCAGAGATGGCCTGCGATGCTTCCTATGGTTCGTGAGTTGTTGCAACTGGTTCTTCGTGCTAATCTCATGTTCTTCTATTTTGAAGGTCTCTATTATCATATATCGAAACGGGCTGCAGGTATTCGTTATGTGTTCATTGGAaaagtgtcaaatcaaaggCCCAGATACCAAATTCTGGGAGTATTTCTATTGATTCAACTTTGTATAATTGCTGCTGAAGGGCTTCGACGGAGCAATTTATCTTCAATTGCAAGTTCAGTTCACCAGGCATCCTTTGGGACCCATCAAAGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAAGGTATTCTGGCATCATCAGATACTGACAAGGGAAATTGGTTGTCTGACGCTTCACATTCTGAGcagTCCCAAGCAAGTAGTGGAGTTAGCAAATGCACTCTCTGCCTGAGTAATCGGCAACACCCAACTGCTACTTCCTGCGGCCATGTATTTTGCTGGAACTGTATAACAGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGTACCCCCTTAACACACTCAAGTCTAGTTTGTTTGTATCATTCGGACTTCTAG 1206 0.4652 MGWGHLGRNPHSNSGDPGVSAEAASATASLPPRFPLAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSAEIYGEDTIRSSESQISAMRELPSSSTSGQSVTALARLKEKLSGFWLNVVQRWPAMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKVSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHQASFGTHQRSAGRGLPVLNEEGILASSDTDKGNWLSDASHSEQSQASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0989 401 MobiDBLite consensus disorder prediction 1 24 - -
Sto5g0989 401 CDD RING-HC_PEX10 346 385 - -
Sto5g0989 401 SUPERFAMILY RING/U-box 346 390 - -
Sto5g0989 401 SMART ring_2 347 384 IPR001841 -
Sto5g0989 401 Pfam Pex2 / Pex12 amino terminal region 49 283 IPR006845 -
Sto5g0989 401 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 33 398 - -
Sto5g0989 401 ProSitePatterns Zinc finger RING-type signature. 362 371 IPR017907 -
Sto5g0989 401 Pfam Ring finger domain 346 385 IPR001841 -
Sto5g0989 401 PANTHER PEROXISOME BIOGENESIS FACTOR 10 33 398 - -
Sto5g0989 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 398 IPR013083 -
Sto5g0989 401 ProSiteProfiles Zinc finger RING-type profile. 347 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0989 Sto-Chr5 6671408 6675093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0989 341 397 C3H Transcription Factor Family AT4G28270 32.877 9.32e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0989 K13346 - gmx:100783914 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0989 5 6671408 6675093 Sto5g0989 5 6671408 6675093 ECH