Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0963 ATGGCGGACGTAATGGCCATGAATGAGATTGAGGCAACAGCGTCGCGGCTTGGACTCGATCTTTCTACCATTGATCTCGATTCCATTCGCTTGCCAGGCGATGATTTTGGCATCATCAGTGATGACGAGGATATTTACCAGGAGGACAATCTGGAGTTTGACACTGGATTTGGCAACATTATATTTGTGGATAACCTCCCAGTTGTACCTAGGGAAAAGTTTGAGAAGCTAGAAGGTGTGATTCGTAAAATTTATAGTCAGATCGGTATGATCAAAGAGGATGGCCTTTGGATGCCTGTTGATCCTGATACTGAGAAAAGTTTAGGTTTCTGCTTCATTGAGTATAATACTCCTCAGGAAGCTGAGCTGGCTAGAGAAAAGACACATGGATACAAGTTGGATCGATCACATGTTTTTTCAGTGAACATGTTTGATGACTTTGACCGGTTTATGAAAGTCCCAGATCAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGGGAAAATCTTCAGCATTGGCTTACTGATGTAAAAGCACGAGACCAGTTTGTGATTCGCGCTGGTTCTGATACTGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCGCTGGGTACTTATTTGGCAACGGTTCACAGACAGGGGGCAGCTGTTTGGGGAGGTGCTGCAACCTTCAATCGTCTTATGCGATATGCTCATCCTcagGTAAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTAGAGATGCTAATAGGgtcatcataaatatatttgatGTGAGGACGGGCAAAGTGAAGAGGGAGTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACAGGGGGTGTCACTGGGGTGTCATGGCCTGTCTTCAGATGGGGTGGTGGTAGAGATGATAGGTACTTTGCAAGAATagggaaaaatataatttctgtATATGAGACAGAGACTTTTTCTCTTGTTGACAAAAAGTCCTTGAAGGTAGAAAATGTAATGGATTTCTGCTGGTCTCCGACTGATCCAATTCTTGCCCTCTTTGTTCCTGAGATGGGTGGTGGTAACCAGCCTGCTAGGGTTAGTCTTGTTCAAATCCCTGGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGCAAGATGTACTGGCAAAGCAATGGTGACTACCTTGCAGTTAAGGTAGATCGATATACAAAGACAAAAAAAAGCACGTACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGACATACCCATCGAAGTTTTGGAACTTGAGAATAAGAATGACAAGATAATTGCATTTGCTTGGGAGCCAAAAGGTCATAGGTTTGCGGTTATTCATGGTGATAACCCTAAGCCTGATATTAGCTTTTACTCTATGCGGACTACTCAGAACACAGGTCGGGTTTCAAAGCTTGCTACATTGAAAGGCAAGCAGGCAAATGCTCTATTTTGGTCGCCTGCAGGTCGCTTCATTGTACTTGCTGGATTGAAAGGCTTTAATGGACAGTTGGAGTTTTATAATGTTGATGAGCTGGAAACCATGGCATCTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTTTGTTGCAACTTCAGTGACTTCAGTTCATGAAATGGAAAACGGTTTTAATATATGGTCTTTCAATGGCAAGCTTCTCTATCGTATTCTGAAGGATCACTTCTTTCAGTTCTTATGGCGTCCAAGGCCACCAACTTTCTTGACCCCGGAGAAAGAGGATGAGATTGGAAGGAACTTGAAGAATTATAGTAAGAAATATGAGGCAGAAGACCAAGATGTGTCATTGTTGCTGAGTGAGCAGGAGCGTGAGAAGCGCAGGATGTTGAAGGAAGAGTGGGACAAGTGGGTCAATGAATGGAAGCAGTGGCATGAAGAAGACAAGTTAGAGAGGCAGAAGCTTAGGGATGGTGAAGCCAGTGACGAAGAAGAGGAATACGAGGCTAAGGACATACAAGTCGAGGAAGTGGTTGATGTATCAGAGGAGATCCTTCCGTTTGAATAA 2145 0.4275 MADVMAMNEIEATASRLGLDLSTIDLDSIRLPGDDFGIISDDEDIYQEDNLEFDTGFGNIIFVDNLPVVPREKFEKLEGVIRKIYSQIGMIKEDGLWMPVDPDTEKSLGFCFIEYNTPQEAELAREKTHGYKLDRSHVFSVNMFDDFDRFMKVPDQWAPPETKPYAPGENLQHWLTDVKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAATFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVIINIFDVRTGKVKREFKGSADDFAIGGTGGVTGVSWPVFRWGGGRDDRYFARIGKNIISVYETETFSLVDKKSLKVENVMDFCWSPTDPILALFVPEMGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYSMRTTQNTGRVSKLATLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMASAEHFMATDIEWDPTGRFVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPTFLTPEKEDEIGRNLKNYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKQWHEEDKLERQKLRDGEASDEEEEYEAKDIQVEEVVDVSEEILPFE 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0963 714 MobiDBLite consensus disorder prediction 676 695 - -
Sto5g0963 714 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 47 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto5g0963 714 Gene3D - 177 379 IPR015943 GO:0005515
Sto5g0963 714 SUPERFAMILY DPP6 N-terminal domain-like 216 599 - -
Sto5g0963 714 PANTHER BNACNNG51870D PROTEIN 5 711 - -
Sto5g0963 714 CDD RRM_eIF3B 58 142 IPR034363 -
Sto5g0963 714 PIRSF Transl_init_eIF3b 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto5g0963 714 Gene3D - 58 142 IPR012677 -
Sto5g0963 714 SUPERFAMILY RNA-binding domain, RBD 55 146 IPR035979 GO:0003676
Sto5g0963 714 Gene3D - 415 622 IPR015943 GO:0005515
Sto5g0963 714 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto5g0963 714 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 135 IPR000504 GO:0003723
Sto5g0963 714 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Sto5g0963 714 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 146 IPR000504 GO:0003723
Sto5g0963 714 SMART rrm1_1 60 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0963 Sto-Chr5 6482020 6485831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0963 5 711 Eukaryotic Initiation Factors Gene Family AT5G27640 76.587 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0963 K03253 - gmx:100817394 1330.85