Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0962 ATGGCTACTAGTGATCATCAGAATCATCAGAGTGATCTGATCGGAACTAGTAGCCATGATGATCATCAATCTTGTTCGAACAAGTACAAAGGCGTGAGGAAGCGCAAATGGGGGAAATGGGTGTCTGAAATCCGGCTTCCCAATAGCCGAGAGCGCATTTGGTTAGGGTCTTACGATAGCGCAGAGAAGGCGGCTCGGGCCTTCGATGCGGCCCTTTACTGTCTACGTGGACCTCGGGCCCATTTCAATTTCCCTGATACACCTTCCGAGTTCGATATCATGAATCTTCATCCTCATTCTCAACACTCTCTTTCTCCCCATCAAATCCAAGACCTTGCTGCTAGGTTTGCCAACCAGTTTCAACCCCATGAGATTAATGATGAGCACCAGCAACAACAGCAACTACCATTATTACCAACTGCAGTTGATCCTTCTCCCTCTGAATCCGATAGGGTTACGGAGACCACCGACACTACTGGAACTGGAACTGGTTATAATATGTACGACTGGTCGTTTTTGAACTCGTTGGACTCCAGTATTGACGACGTCAATTTTAATTACAGTAATCTGCACATTAATGATACCGATGCTCTCTACTGTGGAGGGATAGAGCTAGACAAGATGCACTCTGGGGAGTTGTATCACACTCCTAATTTTCTCATGGATCACTCTGATAATCAAGAATTAGTGTGTCTGGAATCGATCTCTATGGGTGCTTGGGAGTGTGAAAATGGAGGGAAAGGAAGGAACTAA 753 0.4582 MATSDHQNHQSDLIGTSSHDDHQSCSNKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALYCLRGPRAHFNFPDTPSEFDIMNLHPHSQHSLSPHQIQDLAARFANQFQPHEINDEHQQQQQLPLLPTAVDPSPSESDRVTETTDTTGTGTGYNMYDWSFLNSLDSSIDDVNFNYSNLHINDTDALYCGGIELDKMHSGELYHTPNFLMDHSDNQELVCLESISMGAWECENGGKGRN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0962 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 14 194 - -
Sto5g0962 250 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Sto5g0962 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 194 - -
Sto5g0962 250 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Sto5g0962 250 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Sto5g0962 250 MobiDBLite consensus disorder prediction 1 22 - -
Sto5g0962 250 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Sto5g0962 250 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Sto5g0962 250 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Sto5g0962 250 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Sto5g0962 250 MobiDBLite consensus disorder prediction 1 28 - -
Sto5g0962 250 MobiDBLite consensus disorder prediction 139 160 - -
Sto5g0962 250 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0962 Sto-Chr5 6473385 6475688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0962 22 224 AP2-EREBP Transcription Factor Family AT1G74930 44.660 5.13e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto5g0962 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0962 - - mtr:MTR_3g105510 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0962 5 6473385 6475688 Sto5g0962 5 6473385 6475688 ECH